Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0565
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 34   0.14 
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)                  28   7.0  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   28   9.3  
SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 401 EIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATDAE 541
           E P  EA+S D KVE P  + E  + E +ATV E+      +A   E
Sbjct: 22  ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVEAPMEEAAASVE 68


>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2286

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
 Frame = +2

Query: 290  YQRPXRTI*PQKTPI---------SRNRKPFLX*KPXXKSRKQNHPEIPDAEAKSADIKV 442
            YQRP   + PQ+TP          S  + PF    P   +    HP    AE+  A +  
Sbjct: 1648 YQRPP-ALSPQRTPTTTPSPSELGSPEKSPFADSDPVGPAAPARHPHYSPAESACAPLPN 1706

Query: 443  EEPAAQP 463
            EEP+  P
Sbjct: 1707 EEPSVSP 1713


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 401 EIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATD-AEGSAD 553
           E+P  +A ++  + E PAA+PE +  E +A V + + EE  +  + AE   D
Sbjct: 589 EVPIEDADTSTEEAESPAAEPEVAVKEAEAPVEDDAFEEPEALNEKAEDPKD 640


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +2

Query: 365 KPXXKSRKQNHPEIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATDAEG 544
           K   +  ++  PE  D E K  + K E+   +PE  K +      ++  +     +D+EG
Sbjct: 46  KMKKEKERKGVPEDADTEMKKKERK-EKETFEPEQKKKKKDKKAGKVRDDRARKGSDSEG 104

Query: 545 SAD 553
            +D
Sbjct: 105 GSD 107


>SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
 Frame = +2

Query: 293 QRPXRTI*PQKTPI---------SRNRKPFLX*KPXXKSRKQNHPEIPDAEAKSADIKVE 445
           QRP   + PQ+TP          S  + PF    P   +    HP    AE+  A +  E
Sbjct: 333 QRPP-ALSPQRTPTTTPSPFELGSPEKSPFADSDPVGPAASARHPHYSPAESACAPLPNE 391

Query: 446 EPAAQP 463
           EP+  P
Sbjct: 392 EPSVSP 397


>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
          Length = 595

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 522 GXSSFEISATVACXSVFESSG*AAGSSTLISADFASASGIS 400
           G SS ++    +C SVFE +  A  SS L  AD + +  IS
Sbjct: 498 GGSSSQMDVMGSCSSVFEQAMLAGESSNLSDADKSESKDIS 538


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 440  VEEPAAQPEDSKTEXQATV--AEISKEEXPSATDAEGSADS 556
            +E PA   ED KT+ +AT   AE+ +E  P+A D + SA S
Sbjct: 1129 LESPA---EDVKTDFEATSLEAEVFEEYKPTAKDVKESASS 1166


>SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 268 SNDEVPAIPEAXKDDIAPEDSDIAKPETVPXVKTEXKVPEA 390
           S  E P  P A K++  PE  D ++PE      +E K PEA
Sbjct: 497 SEAEAPK-PSAAKEEAEPEQMDTSEPEPAKEPSSEIK-PEA 535


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,542,480
Number of Sequences: 59808
Number of extensions: 200011
Number of successful extensions: 798
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)