Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0565
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK125925-1|BAC86346.1| 623|Homo sapiens protein ( Homo sapiens ... 31 3.3
AF248634-1|AAK39969.1| 442|Homo sapiens syndecan 3 protein. 31 3.3
Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II pro... 31 4.4
X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II prot... 31 4.4
U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein. 31 4.4
BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for IM... 31 4.4
AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta p... 31 4.4
AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II be... 31 4.4
AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, b... 31 4.4
>AK125925-1|BAC86346.1| 623|Homo sapiens protein ( Homo sapiens
cDNA FLJ43937 fis, clone TESTI4013924. ).
Length = 623
Score = 31.5 bits (68), Expect = 3.3
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 389 QNHPEIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEE 517
QNH + +AE K AD+++ E ED+ + + ++E+ + E
Sbjct: 63 QNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSE 105
>AF248634-1|AAK39969.1| 442|Homo sapiens syndecan 3 protein.
Length = 442
Score = 31.5 bits (68), Expect = 3.3
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +2
Query: 389 QNHPEIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATDAEGSADSXAII 568
+N PE+P + S D ++ E D+ E A +K P T +G+ ++
Sbjct: 302 RNEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLL 361
Query: 569 XNMV 580
N +
Sbjct: 362 DNAI 365
>Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II
protein.
Length = 1031
Score = 31.1 bits (67), Expect = 4.4
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 320 QKTPISRNRK-PFLX*KPXXKSRKQNHPEIPDAEAKSADIKVEEPAAQPEDS-----KTE 481
+K P +R RK P KP K K+ +P D +D++ EP P DS E
Sbjct: 712 KKEPGTRVRKTPTSSGKPSAKKVKKRNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAE 771
Query: 482 XQATVAEISKEEXPSATD 535
+ S+EE A D
Sbjct: 772 RPKYTFDFSEEEDDDADD 789
>X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II protein.
Length = 1621
Score = 31.1 bits (67), Expect = 4.4
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 320 QKTPISRNRK-PFLX*KPXXKSRKQNHPEIPDAEAKSADIKVEEPAAQPEDS-----KTE 481
+K P +R RK P KP K K+ +P D +D++ EP P DS E
Sbjct: 1302 KKEPGTRVRKTPTSSGKPSAKKVKKRNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAE 1361
Query: 482 XQATVAEISKEEXPSATD 535
+ S+EE A D
Sbjct: 1362 RPKYTFDFSEEEDDDADD 1379
>U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein.
Length = 350
Score = 31.1 bits (67), Expect = 4.4
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 320 QKTPISRNRK-PFLX*KPXXKSRKQNHPEIPDAEAKSADIKVEEPAAQPEDS-----KTE 481
+K P +R RK P KP K K+ +P D +D++ EP P DS E
Sbjct: 31 KKEPGTRVRKTPTSSGKPSAKKVKKRNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAE 90
Query: 482 XQATVAEISKEEXPSATD 535
+ S+EE A D
Sbjct: 91 RPKYTFDFSEEEDDDADD 108
>BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for
IMAGE:4999541) protein.
Length = 485
Score = 31.1 bits (67), Expect = 4.4
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 320 QKTPISRNRK-PFLX*KPXXKSRKQNHPEIPDAEAKSADIKVEEPAAQPEDS-----KTE 481
+K P +R RK P KP K K+ +P D +D++ EP P DS E
Sbjct: 166 KKEPGTRVRKTPTSSGKPSAKKVKKRNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAE 225
Query: 482 XQATVAEISKEEXPSATD 535
+ S+EE A D
Sbjct: 226 RPKYTFDFSEEEDDDADD 243
>AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta
protein.
Length = 717
Score = 31.1 bits (67), Expect = 4.4
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 320 QKTPISRNRK-PFLX*KPXXKSRKQNHPEIPDAEAKSADIKVEEPAAQPEDS-----KTE 481
+K P +R RK P KP K K+ +P D +D++ EP P DS E
Sbjct: 398 KKEPGTRVRKTPTSSGKPSAKKVKKRNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAE 457
Query: 482 XQATVAEISKEEXPSATD 535
+ S+EE A D
Sbjct: 458 RPKYTFDFSEEEDDDADD 475
>AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II beta
protein.
Length = 1598
Score = 31.1 bits (67), Expect = 4.4
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 320 QKTPISRNRK-PFLX*KPXXKSRKQNHPEIPDAEAKSADIKVEEPAAQPEDS-----KTE 481
+K P +R RK P KP K K+ +P D +D++ EP P DS E
Sbjct: 1279 KKEPGTRVRKTPTSSGKPSAKKVKKRNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAE 1338
Query: 482 XQATVAEISKEEXPSATD 535
+ S+EE A D
Sbjct: 1339 RPKYTFDFSEEEDDDADD 1356
>AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, beta
isozyme variant protein.
Length = 1009
Score = 31.1 bits (67), Expect = 4.4
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 320 QKTPISRNRK-PFLX*KPXXKSRKQNHPEIPDAEAKSADIKVEEPAAQPEDS-----KTE 481
+K P +R RK P KP K K+ +P D +D++ EP P DS E
Sbjct: 690 KKEPGTRVRKTPTSSGKPSAKKVKKRNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAE 749
Query: 482 XQATVAEISKEEXPSATD 535
+ S+EE A D
Sbjct: 750 RPKYTFDFSEEEDDDADD 767
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,158,401
Number of Sequences: 237096
Number of extensions: 924801
Number of successful extensions: 2331
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2327
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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