Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0565
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    32   0.50 
U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical pr...    31   0.87 
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U40029-8|AAA81128.2|  275|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z49131-5|CAA88978.1|  217|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    28   8.1  
AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical...    28   8.1  

>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 377 KSRKQNHPEIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATD 535
           KS +   PE   +E   A  + +EPAA  E+ K   +  V E  KEE P++++
Sbjct: 126 KSEEAPAPEEKKSEEVVAAEEKKEPAAVVEEKKEVPETPVVEDKKEEAPASSE 178


>U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical
           protein C53C9.2 protein.
          Length = 397

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 377 KSRKQNHPEIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATDAE 541
           K+ +   PE  + E +  + K+EEPAA+ E+ + E +    E   EE     + E
Sbjct: 339 KASEPVEPEPEEEEEEEEEEKIEEPAAKEEEEEEEEEEEEEEEELEEEEEEEEEE 393


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/47 (40%), Positives = 20/47 (42%)
 Frame = +2

Query: 389 QNHPEIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSA 529
           QNH EI   E K + I  E PA  PE    E      E  K E  SA
Sbjct: 823 QNHLEIVTRERKLSRINEEAPAVVPEQRNLEVVDEEQEDGKSENGSA 869


>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 274 DEVPAIPEAXKDDIAPEDSDIAKPETVPXVKTEXKVP 384
           +E+P +PE  ++   P DS+I  P   P    E + P
Sbjct: 542 EEIPEVPEPTEEPPTPTDSEIDSPTPAPAPGPEPESP 578


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 274 DEVPAIPEAXKDDIAPEDSDIAKPETVPXVKTEXKVP 384
           +E+P +PE  ++   P DS+I  P   P    E + P
Sbjct: 542 EEIPEVPEPTEEPPTPTDSEIDSPTPAPAPGPEPESP 578


>U40029-8|AAA81128.2|  275|Caenorhabditis elegans Hypothetical
           protein F10G7.3 protein.
          Length = 275

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 295 EAXKDDIAPEDSDIAKPETVPXVKTEXKVPEA 390
           E  +DD A ED D+A  E    + T+ KVPE+
Sbjct: 229 EKMEDDGANEDVDMADDEPGVQINTDTKVPES 260


>Z49131-5|CAA88978.1|  217|Caenorhabditis elegans Hypothetical
           protein ZC373.6 protein.
          Length = 217

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 398 PEIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATDAEGSADSXAI 565
           P+  DA  +    +++    +P   K E +    EI KEE   A D EGS     I
Sbjct: 26  PKAVDALLREIRARLQATGKEPHARKIEQETE--EIKKEELMQAEDVEGSGSGEEI 79


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
           protein 5, isoforma protein.
          Length = 1544

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +2

Query: 398 PEIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATDAEGSA 550
           P++    ++ +++  E P    E   TE  A   E S E  P  T   GS+
Sbjct: 574 PDVQGVWSEISELPSENPITYTESPITESTAPAPETSPETAPEITPERGSS 624


>AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical
           protein Y56A3A.32 protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +2

Query: 365 KPXXKSRKQNHPEIPDAE-AKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATDAE 541
           K   +  +Q H E   AE  K  + K E+PA   E    + QA   E   EE     DAE
Sbjct: 115 KKHEEKHEQKHEEKEHAEPEKKEEAKPEKPAEPKEPEPAQKQAEQPE-QAEEKQETKDAE 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,811,900
Number of Sequences: 27780
Number of extensions: 150689
Number of successful extensions: 528
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)