BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0565 (750 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 34 0.12 At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 31 0.62 At3g49990.1 68416.m05466 expressed protein 31 0.82 At5g44270.1 68418.m05418 hypothetical protein 30 1.4 At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 30 1.4 At5g26200.1 68418.m03118 mitochondrial substrate carrier family ... 30 1.9 At2g03340.1 68415.m00293 WRKY family transcription factor contai... 28 5.8 At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi... 28 7.6 >At3g19020.1 68416.m02415 leucine-rich repeat family protein / extensin family protein similar to extensin-like protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 956 Score = 33.9 bits (74), Expect = 0.12 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Frame = +2 Query: 317 PQKTPISRNRKPFLX*KPXXKSRKQNHPEIPDAEAKSADIKVEEP---AAQPEDSKTEXQ 487 P P + + +P +P +S KQ P+ + K K E P A +PE K + + Sbjct: 446 PSPKPETPSHEPSNPKEPKPESPKQESPKTEQPKPKPESPKQESPKQEAPKPEQPKPKPE 505 Query: 488 ATVAEISKEEXPSATDA 538 + E SK+E P ++ Sbjct: 506 SPKQESSKQEPPKPEES 522 >At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 protein GI:1279562 from [Medicago sativa] Length = 557 Score = 31.5 bits (68), Expect = 0.62 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = +2 Query: 407 PDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATDAEGSAD 553 P A AK+ +K ++ ++ +DS +E + +K P+A D+ S D Sbjct: 141 PAAAAKNGSVKAKKESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDD 189 >At3g49990.1 68416.m05466 expressed protein Length = 502 Score = 31.1 bits (67), Expect = 0.82 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +2 Query: 404 IPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATDAE 541 +P A+ D+K E P A+P KT Q + E K+E +A AE Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE--KKERKNAVKAE 465 >At5g44270.1 68418.m05418 hypothetical protein Length = 309 Score = 30.3 bits (65), Expect = 1.4 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +2 Query: 305 RTI*PQKTPISRNRKPFLX*KPXXKSRKQNHPEI 406 RTI PQ P+S PFL K ++ K N P++ Sbjct: 257 RTIVPQTRPVSNLNNPFLPHKSNKETTKPNSPKL 290 >At2g45800.1 68415.m05696 LIM domain-containing protein similar to PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain protein PLIM1 [Nicotiana tabacum] GI:5932418; contains Pfam profile PF00412: LIM domain Length = 226 Score = 30.3 bits (65), Expect = 1.4 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +1 Query: 274 DEVPAIPEAXKDDIAPEDSDIAKPETV 354 D+ +IPEA +DD APE + +PE V Sbjct: 197 DDTASIPEAKEDDAAPEAAGEEEPEPV 223 >At5g26200.1 68418.m03118 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein Length = 342 Score = 29.9 bits (64), Expect = 1.9 Identities = 16/35 (45%), Positives = 23/35 (65%) Frame = -2 Query: 212 LXESSILGATSRIG*AGTTSFSSATGIAXLTAAKA 108 + +SS+ AT R+G + TTS + A G A LT+A A Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146 >At2g03340.1 68415.m00293 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain Length = 513 Score = 28.3 bits (60), Expect = 5.8 Identities = 11/41 (26%), Positives = 22/41 (53%) Frame = +2 Query: 389 QNHPEIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISK 511 + H + PD + ++ +++V EP A + TE + V S+ Sbjct: 370 ERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSE 410 >At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing protein low similarity to CRP1 [Zea mays] GI:3289002; contains Pfam profile PF01535: PPR repeat Length = 793 Score = 27.9 bits (59), Expect = 7.6 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +3 Query: 411 MLKQNLLILKWKNQLLSLKIQKLXYKLPSLKFQKKXNL 524 M K+N+ + K+K ++L LK K YK + K Q + L Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQL 777 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,234,616 Number of Sequences: 28952 Number of extensions: 140068 Number of successful extensions: 393 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 386 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 392 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1663169840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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