Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0565
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    34   0.12 
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    31   0.62 
At3g49990.1 68416.m05466 expressed protein                             31   0.82 
At5g44270.1 68418.m05418 hypothetical protein                          30   1.4  
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    30   1.4  
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ...    30   1.9  
At2g03340.1 68415.m00293 WRKY family transcription factor contai...    28   5.8  
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi...    28   7.6  

>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 317 PQKTPISRNRKPFLX*KPXXKSRKQNHPEIPDAEAKSADIKVEEP---AAQPEDSKTEXQ 487
           P   P + + +P    +P  +S KQ  P+    + K    K E P   A +PE  K + +
Sbjct: 446 PSPKPETPSHEPSNPKEPKPESPKQESPKTEQPKPKPESPKQESPKQEAPKPEQPKPKPE 505

Query: 488 ATVAEISKEEXPSATDA 538
           +   E SK+E P   ++
Sbjct: 506 SPKQESSKQEPPKPEES 522


>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 407 PDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATDAEGSAD 553
           P A AK+  +K ++ ++  +DS +E +      +K   P+A D+  S D
Sbjct: 141 PAAAAKNGSVKAKKESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDD 189


>At3g49990.1 68416.m05466 expressed protein
          Length = 502

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 404 IPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATDAE 541
           +P   A+  D+K E P A+P   KT  Q +  E  K+E  +A  AE
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE--KKERKNAVKAE 465


>At5g44270.1 68418.m05418 hypothetical protein
          Length = 309

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 305 RTI*PQKTPISRNRKPFLX*KPXXKSRKQNHPEI 406
           RTI PQ  P+S    PFL  K   ++ K N P++
Sbjct: 257 RTIVPQTRPVSNLNNPFLPHKSNKETTKPNSPKL 290


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 274 DEVPAIPEAXKDDIAPEDSDIAKPETV 354
           D+  +IPEA +DD APE +   +PE V
Sbjct: 197 DDTASIPEAKEDDAAPEAAGEEEPEPV 223


>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 342

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -2

Query: 212 LXESSILGATSRIG*AGTTSFSSATGIAXLTAAKA 108
           + +SS+  AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146


>At2g03340.1 68415.m00293 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 513

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 389 QNHPEIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISK 511
           + H + PD + ++ +++V EP A    + TE +  V   S+
Sbjct: 370 ERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSE 410


>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 793

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 411 MLKQNLLILKWKNQLLSLKIQKLXYKLPSLKFQKKXNL 524
           M K+N+ + K+K ++L LK  K  YK  + K Q +  L
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQL 777


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,234,616
Number of Sequences: 28952
Number of extensions: 140068
Number of successful extensions: 393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)