Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0564
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 206 2e-53
07_01_0578 + 4295386-4296489,4297394-4297507 203 1e-52
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.11
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.15
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.20
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 32 0.34
08_02_1278 - 25838146-25839411 32 0.34
03_05_0366 - 23505755-23506441 31 0.80
06_01_0017 + 189346-189561,189614-189905,190024-190043 31 1.1
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 30 1.8
08_02_1285 - 25881091-25881798 29 2.4
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 2.4
04_01_0588 + 7657510-7657992,7658397-7658843 29 4.2
02_04_0457 + 23093020-23093343,23093798-23093806 29 4.2
03_01_0147 - 1170481-1171260,1171332-1171511 28 7.4
03_01_0092 - 731069-731434,731569-733080 28 7.4
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182... 27 9.8
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 9.8
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 27 9.8
11_01_0411 - 3114959-3115000,3115504-3116703 27 9.8
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 9.8
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 206 bits (502), Expect = 2e-53
Identities = 104/196 (53%), Positives = 124/196 (63%), Gaps = 1/196 (0%)
Frame = +3
Query: 66 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 243 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 422
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 423 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 602
ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYAD 182
Query: 603 ILKVYKSQRXRAW*GK 650
K S RA GK
Sbjct: 183 AEKTKDSVAIRAGKGK 198
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 203 bits (495), Expect = 1e-52
Identities = 102/194 (52%), Positives = 125/194 (64%), Gaps = 2/194 (1%)
Frame = +3
Query: 75 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 248
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 249 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 428
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 429 XXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIL 608
ARGH IE +PELPLV++D + I KT QA+ L+++ A++D
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAE 185
Query: 609 KVYKSQRXRAW*GK 650
K S R GK
Sbjct: 186 KAKDSVGIRPGKGK 199
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 255 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 365
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 361 PPRHMLPKAP*PDLWVPPP 305
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +2
Query: 38 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 193
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 38 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 193
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_1278 - 25838146-25839411
Length = 421
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -1
Query: 584 APQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVSSSL 477
A +E LF L+D+LD V+ +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.80
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 141 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 317
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 318 HRSGQGA 338
+ + + A
Sbjct: 168 NDNDEEA 174
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -1
Query: 578 QEDDS--LFGLVDLLDFVSYNQGKLGNLFNNVSSSLNERWDAGSSNGCCQGR--SPLSEV 411
+EDD L G ++ F + + N+ +S L+ +WDAGS + SPLS V
Sbjct: 75 KEDDKYVLHGWQKVMSFQARDSSN-SKAGNDSTSKLSFKWDAGSCSSASSSAMYSPLSAV 133
Query: 410 DATVPAP 390
A AP
Sbjct: 134 SAPAKAP 140
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 38 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 193
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_1285 - 25881091-25881798
Length = 235
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 101 EERDGAGCSQAPPVRVQGAHTSGPG 175
EE DG G ++A V +GAH +G G
Sbjct: 173 EEEDGEGSAEAMEVEEEGAHLAGAG 197
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 38 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 193
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +3
Query: 177 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 347
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 348 MCRGGRMFAPTKPWRRW 398
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 240 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 344
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 32 GIASLK*R-NESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 193
G ASL+ ++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 358 PRHMLPKAP*PDLWVPPPRTRGIRATARPVP 266
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>12_02_0754 -
22817277-22817657,22817796-22817927,22818026-22818272,
22818473-22818909
Length = 398
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 605 DIRPCLEAPQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVS 486
D P L+ + F V+ L V++NQG L N+ NVS
Sbjct: 248 DTTPDLDVVIDFIKCFPCVEKLYIVAFNQGNLKNIRRNVS 287
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 150 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 263
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 144 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 314
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 315 T 317
T
Sbjct: 215 T 215
>11_01_0411 - 3114959-3115000,3115504-3116703
Length = 413
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 346 LPKAP*PDLWVPPPRTRGIRATARPVPHDSALV-W*PASL 230
+P P P LW+P P A P+ H S+L W P +L
Sbjct: 276 VPCPPAPPLWLPSPSVPSSLALHVPLFHASSLERWSPTAL 315
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 234 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 392
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,532,879
Number of Sequences: 37544
Number of extensions: 432695
Number of successful extensions: 1625
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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