Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0564
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               227   8e-60
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)                  29   2.5  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   3.3  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.3  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   5.7  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   5.7  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              28   7.6  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  227 bits (554), Expect = 8e-60
 Identities = 109/193 (56%), Positives = 132/193 (68%)
 Frame = +3

Query: 72  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 251
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 252 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 431
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH          
Sbjct: 60  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRF 119

Query: 432 XXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 611
                           ARGH IEKI E+PLV++D ++ + KT  AV  L+ + A+ D+ K
Sbjct: 120 AVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEK 179

Query: 612 VYKSQRXRAW*GK 650
              S++ RA  GK
Sbjct: 180 CIDSKKIRAGKGK 192


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 319 WVPPPRTRGIRATARPVPHD 260
           W+PP RTR  R T  PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247


>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
          Length = 532

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 197 VQELEAALLREQGGWSPNQCRIMGYRTCCRPNSSCPWWW 313
           + E  A L+   G   P++  I+ +R CCR N  C W+W
Sbjct: 221 ITEAAAVLIVVNGTGVPDRL-IVSFRGCCRVN--CNWYW 256


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 249  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 365
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 168  DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 293
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 267 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 395
           G GR + R P   GGG  R   G +G M  GG    P   W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 139  GRGLAAPCTVSLFSEYTDTKGRATDRLI 56
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 162 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 284
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +3

Query: 264 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 395
           WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 24  WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,882,378
Number of Sequences: 59808
Number of extensions: 421339
Number of successful extensions: 1333
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)