Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0564
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 224 4e-59
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 27 8.7
AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever sho... 27 8.7
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 27 8.7
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho... 27 8.7
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 224 bits (548), Expect = 4e-59
Identities = 110/193 (56%), Positives = 132/193 (68%)
Frame = +3
Query: 72 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 251
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 252 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 431
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 121
Query: 432 XXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 611
QARGH+I+++ E+PLVV+DKV+ KTK+AV+FLRR W+DI K
Sbjct: 122 AVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEK 181
Query: 612 VYKSQRXRAW*GK 650
VY S+R RA GK
Sbjct: 182 VYNSKRNRAGKGK 194
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 31.1 bits (67), Expect = 0.71
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +3
Query: 204 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 374
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196
Query: 375 PTKP 386
KP
Sbjct: 197 APKP 200
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
protein K03H1.5 protein.
Length = 1385
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 269 YRTCCRPNSSCPWWWYP*VRSGC--LR*HVSWWTYVRPH 379
YRTCC+ C ++++ + +GC R + + Y PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 120 PAPSRSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 19
P S +S N PT+K+ L I+ YF PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216
>AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform b protein.
Length = 461
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +3
Query: 75 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 248
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 249 TSAESWGTGRAVARIPRVRGGGTHRSGQG 335
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +3
Query: 75 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 248
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 249 TSAESWGTGRAVARIPRVRGGGTHRSGQG 335
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform a protein.
Length = 1241
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +3
Query: 75 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 248
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 249 TSAESWGTGRAVARIPRVRGGGTHRSGQG 335
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,242,302
Number of Sequences: 27780
Number of extensions: 300071
Number of successful extensions: 893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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