Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0562
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...   264   6e-71
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...   237   6e-63
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...   219   3e-57
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929...    54   2e-07
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151...    53   2e-07
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744...    52   7e-07
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438...    50   3e-06
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726...    35   0.087
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264...    35   0.087
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198...    31   1.1  
07_03_1414 - 26403361-26403969                                         31   1.4  
07_03_1422 + 26462871-26463434,26463772-26463897                       29   3.3  
07_03_1413 - 26396426-26396890                                         29   3.3  
01_01_1202 - 9681836-9683146                                           29   4.3  
02_02_0061 + 6468190-6471046,6471318-6471736                           28   9.9  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score =  264 bits (647), Expect = 6e-71
 Identities = 125/225 (55%), Positives = 162/225 (72%)
 Frame = +3

Query: 3   APLVVKKVEPKKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRL 182
           AP+  KK + +K+ NPLFEKRPK F IG  + P +DL RFV+WPK +RIQRQ+ +L++RL
Sbjct: 9   APVPAKK-KTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRL 67

Query: 183 KVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPN 362
           KVPP +NQFT+TLDK  A  LFK+L KYRPE                          +P 
Sbjct: 68  KVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAK-KPI 126

Query: 363 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 542
            ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++V
Sbjct: 127 VVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIV 186

Query: 543 HRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGG 677
           H+KT + L LT V++ D+  FSK++EAIK NFN++++E+RK WGG
Sbjct: 187 HKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGG 231


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score =  237 bits (581), Expect = 6e-63
 Identities = 116/225 (51%), Positives = 156/225 (69%)
 Frame = +3

Query: 3   APLVVKKVEPKKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRL 182
           AP+  +K      VNPLFEKRPK F IG  + P +DL RFVRWPK +RIQRQ+ VL++RL
Sbjct: 9   APVPARKKAAAAAVNPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRL 68

Query: 183 KVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPN 362
           KVPP +NQFT+TLDK       ++L++ + E                          +P 
Sbjct: 69  KVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEAK-----------------KPI 111

Query: 363 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 542
            ++ G + VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++V
Sbjct: 112 VVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIV 171

Query: 543 HRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGG 677
           H+KT + L LT V++ D+  FSK++EAIK+NFN++++E+RK WGG
Sbjct: 172 HKKTASVLCLTTVKNEDKLEFSKILEAIKSNFNDKFDEVRKKWGG 216


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score =  219 bits (534), Expect = 3e-57
 Identities = 109/215 (50%), Positives = 142/215 (66%)
 Frame = +3

Query: 33  KKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 212
           +K+ NPLFEKRPK F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT
Sbjct: 2   EKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFT 61

Query: 213 QTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVT 392
           +TLDK  A  LFK+L KYRPE                          +P  ++ G N VT
Sbjct: 62  RTLDKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVT 120

Query: 393 KLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 572
            L+E+ KAQLVVIAHDVDPIELV++LPALCRKM               +VH+KT + L L
Sbjct: 121 YLIEQSKAQLVVIAHDVDPIELVVWLPALCRKM--------------EIVHKKTASVLCL 166

Query: 573 TNVESGDRASFSKVVEAIKTNFNERYEELRKHWGG 677
           T V++ D+  FSK++EAIK NFN++++E+RK WGG
Sbjct: 167 TTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGG 201


>06_01_1127 +
           9294079-9294193,9294300-9294369,9294611-9294716,
           9295665-9295805,9296377-9296475
          Length = 176

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
 Frame = +3

Query: 366 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 539
           ++ G   V K + + +  L +IA ++ PI+++  +P LC +  +PY  V  K  L     
Sbjct: 45  LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGT 104

Query: 540 VHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGG 677
             R TC  L LT    G+      V E +KT++++   E+ +   G
Sbjct: 105 TKRPTCCVLVLTKPAKGELE--EDVKEKLKTDYDQVMSEVAEAGNG 148


>10_01_0125 +
           1509642-1509759,1509847-1509950,1510693-1510824,
           1510936-1510962
          Length = 126

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +3

Query: 366 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 539
           ++ G N  TK + +  A+ VV+A D +P+E++L LP L     VPY  V  K  LG    
Sbjct: 33  LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 92

Query: 540 VHRKTCTCLALTNVESGDRASFSKVVEAIK 629
           V R    C   +N  S  R   + +  AI+
Sbjct: 93  VTRPVIACSVTSNEASNLRDPINNLKVAIE 122


>03_02_0321 +
           7443835-7443837,7443957-7444077,7444168-7444271,
           7445056-7445187,7445285-7445311
          Length = 128

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +3

Query: 366 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 539
           ++ G N  TK + +  ++ VV+A D +P+E++L LP L     VPY  V  K  LG    
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94

Query: 540 VHRKTCTCLALTNVESGDRASFSKVVEAIK 629
           V R    C   +N  S  +     + +AI+
Sbjct: 95  VTRPVIACSVTSNEGSQLKTPIQNLKDAIE 124


>02_05_0610 -
           30342105-30342266,30343024-30343129,30343788-30343857,
           30343978-30344092
          Length = 150

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 25/98 (25%), Positives = 45/98 (45%)
 Frame = +3

Query: 366 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 545
           ++ G   V K + +    L VIA ++ PI+++  +P LC +  +PY  V  K  L     
Sbjct: 45  LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGT 104

Query: 546 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 659
            K  TC  L   +        +V E +K++++    E+
Sbjct: 105 TKRPTCCVLVMTKPAKGEINEEVKEKLKSDYDHVVAEV 142


>07_01_0875 -
           7265529-7265588,7265681-7265746,7266008-7266293,
           7267138-7267142
          Length = 138

 Score = 34.7 bits (76), Expect = 0.087
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +3

Query: 375 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 533
           G     K +EK  AQL V+A D D  + V  + ALC +  V    V     LG
Sbjct: 41  GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93


>07_01_0360 +
           2646279-2646283,2647113-2647398,2648043-2648108,
           2648199-2648258
          Length = 138

 Score = 34.7 bits (76), Expect = 0.087
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +3

Query: 375 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 533
           G     K +EK  AQL V+A D D  + V  + ALC +  V    V     LG
Sbjct: 41  GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93


>06_03_0392 +
           20318728-20319309,20319596-20319725,20319844-20319895,
           20319995-20320061,20320547-20320633,20322526-20322567,
           20322635-20322740,20323155-20323219,20323299-20323343,
           20323442-20323549,20323636-20323723,20324147-20324193,
           20324355-20324363
          Length = 475

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 143 PHPAPEGCTSASSESAPSDQP 205
           P PAPE   +A+ E+APSD P
Sbjct: 53  PQPAPEEAPAAAEEAAPSDDP 73


>07_03_1414 - 26403361-26403969
          Length = 202

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 155 ALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 15
           AL A +  P +  G++  + + +T G+ L P LEE +    GL L+D
Sbjct: 76  ALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122


>07_03_1422 + 26462871-26463434,26463772-26463897
          Length = 229

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 155 ALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 15
           AL   +  P Y  G+V  + + +T G+ L P LEE      GL L D
Sbjct: 74  ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120


>07_03_1413 - 26396426-26396890
          Length = 154

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 155 ALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 15
           AL   +  P Y  G+V  + + +T G+ L P LEE      GL L D
Sbjct: 28  ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74


>01_01_1202 - 9681836-9683146
          Length = 436

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +2

Query: 2   RPIGGQKG*AQEDRESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSASS 181
           R +GG +      RE +L  EA      SGHS+N G      + Q+  H   E     S+
Sbjct: 262 RDVGGSRS---SIRERNLEREAPMAVSVSGHSSNQGGSSQHAVIQIEQHEEGETVPLVSA 318

Query: 182 ESAPSDQP 205
            SA +  P
Sbjct: 319 ASANNAAP 326


>02_02_0061 + 6468190-6471046,6471318-6471736
          Length = 1091

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -1

Query: 164 SLLALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEE 51
           SL  L A +LG +  +G +PS++ +L N K L  +LEE
Sbjct: 111 SLQNLQALVLGENRLTGSIPSFIGSLANLKFL--ILEE 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,791,434
Number of Sequences: 37544
Number of extensions: 415220
Number of successful extensions: 1562
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)