Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0562
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             279   1e-75
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)       170   1e-42
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        58   1e-08
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          45   6e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               35   0.088
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)         31   1.1  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.5  
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)               29   5.8  
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)           28   7.7  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   7.7  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  279 bits (685), Expect = 1e-75
 Identities = 127/224 (56%), Positives = 159/224 (70%)
 Frame = +3

Query: 6   PLVVKKVEPKKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 185
           P    K  PKK VNPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L +RLK
Sbjct: 16  PYAAAKAVPKKTVNPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLK 75

Query: 186 VPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNT 365
           VPP INQFTQ LD+ +   LFK+L KYRPET                         +P  
Sbjct: 76  VPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPML 135

Query: 366 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 545
           ++ G N +T LVE KKAQLVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH
Sbjct: 136 VKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVH 195

Query: 546 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGG 677
           +K  T L +T V   D+ S + ++E++KTN+NER++E+RKHWGG
Sbjct: 196 KKNATALCITGVRQEDKNSLNNLIESVKTNYNERFDEIRKHWGG 239


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score =  170 bits (413), Expect = 1e-42
 Identities = 77/145 (53%), Positives = 99/145 (68%)
 Frame = +3

Query: 243 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQL 422
           LFK+L KYRPET                         +P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 423 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRAS 602
           VVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K  T L +T V   D+ S
Sbjct: 64  VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNS 123

Query: 603 FSKVVEAIKTNFNERYEELRKHWGG 677
            + ++E++KTN+NER++E+RKHWGG
Sbjct: 124 LNNLIESVKTNYNERFDEIRKHWGG 148


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +3

Query: 366 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 539
           +R G N  TK + +  A+ +V+A D +P+E++L LP LC    VPY  V+ K+ LG    
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATG 153

Query: 540 VHRKTCTCLALTNVESGDRASFSKVVEAIK 629
           V R    C    N  S  +     +  AI+
Sbjct: 154 VTRPVIACAVTVNEGSQLKPQIQTLQNAIE 183


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 354 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 521
           +  T+R G   V K + K +   V++A DV PI+++  +P +C    +PY  V  K
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +3

Query: 375 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 533
           G +   K ++K++A L +++++ D    V  + ALC + G+P   V    +LG
Sbjct: 41  GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93


>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
          Length = 1898

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = +3

Query: 474  ALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 653
            A C++    + +++GK +  AL+ +KT   L +  V    R S + VV+   ++ +E+Y 
Sbjct: 1206 ASCKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYS 1263

Query: 654  EL 659
            ++
Sbjct: 1264 DI 1265


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 510  VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 659
            VKGK+ LG    +KT   L +  V    R S S VVEA  ++  E+Y ++
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDI 1137


>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 501 YCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 659
           + +++GK +  AL+ +KT   L +  V      S S VVEA  ++  E+Y ++
Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDI 388


>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
          Length = 1508

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 567  LSMCMSCGVQVHRGGTCP*--QCSMVRPFYGITLAGREPAQW 448
            L  C+ C +Q H  G      +  MVRP+ G      EPA W
Sbjct: 1187 LLACLFCRLQSHEDGVTVDFSRMKMVRPYEGAIRRSFEPAMW 1228


>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
          Length = 437

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 610 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 509
           F     + +S   R +H H+ RCTSAP    P T
Sbjct: 61  FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 356 PLWWRLIFLGNLSFSSFPQPLFPG 285
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,625,794
Number of Sequences: 59808
Number of extensions: 427399
Number of successful extensions: 1474
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)