Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0562
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   261   5e-70
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   249   2e-66
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   123   1e-28
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   103   2e-22
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    54   9e-08
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    48   1e-05
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.034
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  261 bits (639), Expect = 5e-70
 Identities = 117/215 (54%), Positives = 155/215 (72%)
 Frame = +3

Query: 33  KKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 212
           K++ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF 
Sbjct: 26  KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 85

Query: 213 QTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVT 392
             LD  +A+  FK+L+KYRPE+                         RPNT+R G NT+T
Sbjct: 86  TALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTIT 145

Query: 393 KLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 572
           +LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +V RKT   +AL
Sbjct: 146 RLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVAL 205

Query: 573 TNVESGDRASFSKVVEAIKTNFNERYEELRKHWGG 677
            +V   D+++ +K+VE +  NF+ER+EE+RKHWGG
Sbjct: 206 VDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGG 240


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  249 bits (610), Expect = 2e-66
 Identities = 117/215 (54%), Positives = 155/215 (72%)
 Frame = +3

Query: 33  KKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 212
           K++ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF 
Sbjct: 26  KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 85

Query: 213 QTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVT 392
             LD  +A+  FK+L+KYRPE+                         RPNT+R G NT+T
Sbjct: 86  TALDSQSARQAFKLLDKYRPESTEVTK--------------------RPNTVRHGVNTIT 125

Query: 393 KLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 572
           +LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +V RKT   +AL
Sbjct: 126 RLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVAL 185

Query: 573 TNVESGDRASFSKVVEAIKTNFNERYEELRKHWGG 677
            +V   D+++ +K+VE +  NF+ER+EE+RKHWGG
Sbjct: 186 VDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGG 220


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  123 bits (297), Expect = 1e-28
 Identities = 53/82 (64%), Positives = 68/82 (82%)
 Frame = +3

Query: 33  KKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 212
           K++ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF 
Sbjct: 129 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 188

Query: 213 QTLDKTTAKGLFKILEKYRPET 278
             LD  +A+  FK+L+KYRPE+
Sbjct: 189 TALDSHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  103 bits (246), Expect = 2e-22
 Identities = 44/64 (68%), Positives = 54/64 (84%)
 Frame = +3

Query: 33  KKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 212
           K++ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF 
Sbjct: 129 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 188

Query: 213 QTLD 224
             LD
Sbjct: 189 TALD 192


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = +3

Query: 366 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 539
           ++ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+ K+ LG    
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94

Query: 540 VHRKTCTCLALTNVESGDRASFSKVVEAIK 629
           V R         N  S  ++   K+ E ++
Sbjct: 95  VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/89 (22%), Positives = 44/89 (49%)
 Frame = +3

Query: 363 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 542
           T+R G   V K + + +  + ++A +V PI++   +P +C +  +PY  +  + +LG  V
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127

Query: 543 HRKTCTCLALTNVESGDRASFSKVVEAIK 629
             +  + L         +  + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -1

Query: 320 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 201
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 193 LRSTNLPRHWTRLQLRA 243
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,755,230
Number of Sequences: 27780
Number of extensions: 317318
Number of successful extensions: 994
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)