Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0562
(800 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 271 4e-73
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 270 5e-73
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 54 1e-07
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 4e-07
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 2e-05
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 36 0.031
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 36 0.031
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 35 0.055
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 35 0.055
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 35 0.055
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.7
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 29 4.7
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 29 4.7
At5g15680.1 68418.m01834 expressed protein 28 6.3
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 271 bits (664), Expect = 4e-73
Identities = 128/222 (57%), Positives = 159/222 (71%)
Frame = +3
Query: 12 VVKKVEPKKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVP 191
V K +P+K+ NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVP
Sbjct: 9 VASKKKPEKVTNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVP 68
Query: 192 PPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIR 371
P +NQFT+TLDK A LFKIL KYRPE +P ++
Sbjct: 69 PALNQFTKTLDKNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESK-KPIVVK 127
Query: 372 SGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRK 551
G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+K
Sbjct: 128 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQK 187
Query: 552 TCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGG 677
T L LT V++ D+ FSK++EAIK NFN++YEE RK WGG
Sbjct: 188 TAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGG 229
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 270 bits (663), Expect = 5e-73
Identities = 127/223 (56%), Positives = 160/223 (71%)
Frame = +3
Query: 9 LVVKKVEPKKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKV 188
+ KK +K+ NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKV
Sbjct: 9 VAAKKKTAEKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKV 68
Query: 189 PPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTI 368
PP +NQFT+TLDK A LFK+L KYRPE +P +
Sbjct: 69 PPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESK-KPIVV 127
Query: 369 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHR 548
+ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+
Sbjct: 128 KYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQ 187
Query: 549 KTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGG 677
KT +CL LT V++ D+ FSK++EAIK NFN++YEE RK WGG
Sbjct: 188 KTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGG 230
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/100 (26%), Positives = 51/100 (51%)
Frame = +3
Query: 366 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 545
++ G V K + + + L VIA ++ PI+++ LP LC + GVPY V K L
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGA 110
Query: 546 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 665
K TC L ++ ++ + +KT++ + +++++
Sbjct: 111 TKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKE 150
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +3
Query: 366 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 539
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 540 VHRKTCTCLALTNVESGDRASFSKVVEAIK 629
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +3
Query: 366 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 539
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 540 VHRKTCTCLALTNVESGDRASFSKVVEAIK 629
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +3
Query: 366 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 539
++ G N TK + + ++ +V+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACD 94
Query: 540 VHRKTCTCLALTNVESGDRASFSKVVEAIK 629
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +3
Query: 384 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTC 557
+ TK + + ++ VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI 132
Query: 558 TCLALTNVESGDRASFSKVVEAIK 629
C +N S ++ + +AI+
Sbjct: 133 ACSVTSNEASQLKSQIQHLKDAIE 156
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.031
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 375 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 533
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.031
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 375 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 533
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.055
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 375 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 533
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.055
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 375 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 533
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.055
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 375 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 533
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 371 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 213
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 509 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQALG 673
C+G VP CT D H+ + VW +LLE + E+++ LR G
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 47 SSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEG 163
S+L + + LC H ++G V+ K + +Y H PEG
Sbjct: 451 SNLLLDGRLLCEEEHHFDDTGSVETFKSSGIYEHVIPEG 489
>At5g15680.1 68418.m01834 expressed protein
Length = 2151
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +2
Query: 5 PIGGQKG*AQEDRESSLRE---EAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSA 175
P+ G G ++SS E + K L + A SG +Q MA P P G +A
Sbjct: 2048 PVQGGTG-GSHPQDSSYSENGTDEKTLVPQTSFKARSGPLQYAMMAATMSQPFPLGAAAA 2106
Query: 176 SSESAPSD 199
S P D
Sbjct: 2107 ESGIPPRD 2114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,141,435
Number of Sequences: 28952
Number of extensions: 305195
Number of successful extensions: 1066
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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