Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0560
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B5D54 Cluster: PREDICTED: hypothetical protein;...    43   0.007
UniRef50_Q9ZIQ6 Cluster: Bifunctional chemotaxis protein CheF; n...    38   0.16 
UniRef50_UPI00015B59DC Cluster: PREDICTED: hypothetical protein;...    35   1.9  
UniRef50_Q3EC30 Cluster: Uncharacterized protein At2g11005.1; n=...    35   1.9  
UniRef50_Q6C029 Cluster: Similar to sp|Q02630 Saccharomyces cere...    34   3.4  

>UniRef50_UPI00015B5D54 Cluster: PREDICTED: hypothetical protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
           protein - Nasonia vitripennis
          Length = 169

 Score = 42.7 bits (96), Expect = 0.007
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +1

Query: 130 DCKEEYNQSXNGTENFRVHVNGLVIAMMPAES 225
           D  + Y+Q  NGTEN+RV V+GLV  M PA+S
Sbjct: 55  DATDHYDQRQNGTENYRVKVDGLVFIMAPADS 86


>UniRef50_Q9ZIQ6 Cluster: Bifunctional chemotaxis protein CheF;
           n=24; Epsilonproteobacteria|Rep: Bifunctional chemotaxis
           protein CheF - Helicobacter pylori (Campylobacter
           pylori)
          Length = 804

 Score = 38.3 bits (85), Expect = 0.16
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
 Frame = +1

Query: 127 SDCKEEYNQSXNGTENFRVHVNGLVIAMMPAESFAESLLSAMPDLQEL-LESEGIN-QLQ 300
           ++  ++ N+  N  EN   +      A     S +++ L+  PDL    + +E +  +++
Sbjct: 142 TEAPQKENKEENKEENKEENKENKAKAPTAENSASDNPLADEPDLDYANMSAEEVEAEIE 201

Query: 301 QQXXXXXXXXXXXXXEEKPQTESEVLATSENPKPTESAAPLSDVXIKSDTPHNKEASVNK 480
           +              ++K + + EV  T E PK     AP ++   K+DT  NK  S+  
Sbjct: 202 RLLNKRQEADKERRAQKKQEAKQEVTPTKETPKTETPKAPKTETKAKADTEENKAPSIGV 261

Query: 481 QK 486
           ++
Sbjct: 262 EQ 263


>UniRef50_UPI00015B59DC Cluster: PREDICTED: hypothetical protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
           protein - Nasonia vitripennis
          Length = 740

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 346 EEKPQTESEVLATSENPKPTESAAPLSDVXIKSDTPHNKEASVNKQK 486
           EEKP   +E    SE   PTE+A+P S      DT   K+   +K+K
Sbjct: 106 EEKPAEAAEAAPASEVTTPTEAASPASPNATSPDTKEAKKKDKSKKK 152


>UniRef50_Q3EC30 Cluster: Uncharacterized protein At2g11005.1; n=1;
           Arabidopsis thaliana|Rep: Uncharacterized protein
           At2g11005.1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 170

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 25/77 (32%), Positives = 35/77 (45%)
 Frame = -1

Query: 419 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFGFCCCN*LIPSDSNSSCKSGIADN 240
           G+ D  G G    ++ SD   G SSG GG    GGFG    N  + SDS+         +
Sbjct: 29  GSGDGGGSGDGGGSRDSDGS-GDSSG-GGSGDSGGFGDNSDNNSVSSDSSGGGSRDGGGS 86

Query: 239 NDSANDSAGIMAMTSPF 189
            D+ N   G++A+   F
Sbjct: 87  GDNGNTDDGVVALVMSF 103


>UniRef50_Q6C029 Cluster: Similar to sp|Q02630 Saccharomyces
           cerevisiae YMR047c NUP116 nuclear pore protein; n=1;
           Yarrowia lipolytica|Rep: Similar to sp|Q02630
           Saccharomyces cerevisiae YMR047c NUP116 nuclear pore
           protein - Yarrowia lipolytica (Candida lipolytica)
          Length = 1097

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
 Frame = -1

Query: 446 SDFMXTSLKGAADSVGFGFSDVAKTSDSV*GFSSGLG----GEVTIGGFGFCCCN*LIPS 279
           S F  TS  G+ ++ G  F     TS++  GF  G G       T GGFG         +
Sbjct: 249 SPFGGTSSFGSGNTGGGMFGSTNNTSNTTSGFGGGFGQNNANTNTTGGFG----GGFGQN 304

Query: 278 DSNSSCKSGIADNNDSANDSAGIMAMTSPFT 186
           ++ ++   G+  NN++ N+++G    TS  T
Sbjct: 305 NTTNNSGGGLFGNNNTTNNTSGGFGQTSTST 335


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,860,473
Number of Sequences: 1657284
Number of extensions: 8563787
Number of successful extensions: 25456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25410
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)