Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0560
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    29   0.77 
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    27   2.3  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   9.5  

>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 346 EEKPQTESEVLATSENPKPTESAAPLSDVXIKSDTPHNKEASVNKQKRPQ 495
           E+     S++   S++ KP E  AP S   IK+D P N     N ++  Q
Sbjct: 336 EQSIDVSSDIGLRSDSSKPNE--APTSSENIKADQPENSTKQENPEEDMQ 383


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 326 TIGGFGFCCCN*LIPSDSNSSCKSGIADNNDSANDSAGIMAMTS 195
           T+GG    C + L+  DSN   K GI +      D   IM + S
Sbjct: 192 TMGGTKLVCSDVLLNDDSNCPSKKGINNYQYPRTDPCVIMVILS 235


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 139 PYSQN*VELPQRAPITRPTPLPHTL 65
           P SQ+ + +P R P   P  +PHT+
Sbjct: 6   PSSQSRLSVPGRTPHLPPLTIPHTV 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,075
Number of Sequences: 5004
Number of extensions: 35370
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)