Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0560
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    30   1.4  
11_01_0543 + 4295522-4295863                                           27   9.8  
09_02_0561 + 10681056-10682285,10682546-10682764                       27   9.8  

>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 26/81 (32%), Positives = 39/81 (48%)
 Frame = +1

Query: 205  AMMPAESFAESLLSAMPDLQELLESEGINQLQQQXXXXXXXXXXXXXEEKPQTESEVLAT 384
            A+  AE F+ES LSA+    EL  + GI Q+                +E+   E    AT
Sbjct: 1752 AVSSAEKFSESNLSAV----EL--THGIQQVHYLETMEEMKGTEGTCDEEICYEQT--AT 1803

Query: 385  SENPKPTESAAPLSDVXIKSD 447
            SE+P PT++   L D  ++S+
Sbjct: 1804 SEDPSPTDNGKSLQDYHVESN 1824


>11_01_0543 + 4295522-4295863
          Length = 113

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 356 GFSSGLGGEVTIGGFGFCCC 297
           GFS G G EV   G  +CCC
Sbjct: 79  GFSPGAGCEVMDDGHIYCCC 98


>09_02_0561 + 10681056-10682285,10682546-10682764
          Length = 482

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 265 LVSRASPTTMIRQTTRPASWR*LARLREPENFPFHXD 155
           LV  ASP  + R       WR   R+   +NFPFH D
Sbjct: 28  LVRVASPVWLTRAAATCKRWR---RIVANDNFPFHMD 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,824
Number of Sequences: 37544
Number of extensions: 239125
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)