Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0560
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical...    28   5.0  
Z81037-9|CAB02749.2|  425|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    28   6.6  
AF047663-3|AAC04452.1|  137|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    28   6.6  
AF038623-8|AAB94160.2|  631|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z81575-2|CAB04639.1|  339|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U62772-1|AAB04136.1|  763|Caenorhabditis elegans RNA helicase pr...    27   8.7  
L19948-1|AAC27384.1|  763|Caenorhabditis elegans RNA helicase pr...    27   8.7  
AF000197-1|AAB52901.2|  763|Caenorhabditis elegans Germ-line hel...    27   8.7  

>AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical
           protein F36H12.3 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 346 EEKPQTESEVLATSENPKPTESAAPLSDVXIKSDTPHNKEASV 474
           EEK + E +V      PKP  S  P  D+  K+D    K+ ++
Sbjct: 207 EEKKEDEKKVEPKPGEPKPHISIEPPGDLMFKADQQEQKKLTL 249


>Z81037-9|CAB02749.2|  425|Caenorhabditis elegans Hypothetical
           protein C17E4.1 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 364 ESEVLATSENPKPTESAAPLSDVXIKSDTPHNKEAS--VNKQK 486
           E E   T++ P P  SAAP+S V  KS T  N++++  + +QK
Sbjct: 95  EPETAETAKTPSP--SAAPVSPVLEKSKTKTNQKSTTEIEQQK 135


>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 419 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 309
           GA +S GF      +TS S   F SG GG+ T  GFG
Sbjct: 360 GATESSGF---PTKETSTSGGTFGSGFGGKPTSTGFG 393


>AF047663-3|AAC04452.1|  137|Caenorhabditis elegans Hypothetical
           protein W09G12.9 protein.
          Length = 137

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 508 LISAFVVVFVYLRTLLYCVVYLILXRHRSKAPPIL 404
           L    +++   L  +++C+++++  R RS  PPIL
Sbjct: 11  LAVVLLLIAAALLVVVFCLIWMLKCRKRSSQPPIL 45


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 419 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 309
           GA +S GF      +TS S   F SG GG+ T  GFG
Sbjct: 360 GATESSGF---PTKETSTSGGTFGSGFGGKPTSTGFG 393


>AF038623-8|AAB94160.2|  631|Caenorhabditis elegans Hypothetical
           protein T08B6.4 protein.
          Length = 631

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 385 SENPKPTESAAPLSDVXIKSDTPHNKEASVNKQKRP 492
           S N    +S   + DV +++  P N E ++ K KRP
Sbjct: 158 SNNMTGKDSNKDVKDVDVEAANPENPETNICKDKRP 193


>Z81575-2|CAB04639.1|  339|Caenorhabditis elegans Hypothetical
           protein R08H2.2 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 350 SSGLGGEVTIGGF-GFCCCN*LIPSDSNSSCKSGIADN 240
           + GL   V I  + GFCCC  L  +  ++SC++    N
Sbjct: 210 TGGLVNSVIIMSYCGFCCCKKLRENRKHASCRTADLQN 247


>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical
           protein F57C7.1b protein.
          Length = 1087

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
 Frame = +1

Query: 181 VHVNGLVIA-MMPAESFAESLLSAM----PDLQELLESEGINQLQQQXXXXXXXXXXXXX 345
           V VN + +A   PAE+ A+S  S +    P    ++E+  +++ +++             
Sbjct: 45  VQVNDIAVAEASPAETDAKSSASPVSGPEPPTSAVVENRDLDEFKKESGSNDDKQEEIN- 103

Query: 346 EEKPQTESEVLATSENPKP-----TESAAPLSDVXIKSDTPHNKEASVNKQKRPQ 495
           E+K   E  V   +E+        T+     SD     D  H+K  SV+  ++PQ
Sbjct: 104 EDKDSNEETVFQQTESGSADVVDKTDVKQKDSDSSADDDHSHSKSGSVHSPQKPQ 158


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical
           protein F57C7.1a protein.
          Length = 1209

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
 Frame = +1

Query: 181 VHVNGLVIA-MMPAESFAESLLSAM----PDLQELLESEGINQLQQQXXXXXXXXXXXXX 345
           V VN + +A   PAE+ A+S  S +    P    ++E+  +++ +++             
Sbjct: 45  VQVNDIAVAEASPAETDAKSSASPVSGPEPPTSAVVENRDLDEFKKESGSNDDKQEEIN- 103

Query: 346 EEKPQTESEVLATSENPKP-----TESAAPLSDVXIKSDTPHNKEASVNKQKRPQ 495
           E+K   E  V   +E+        T+     SD     D  H+K  SV+  ++PQ
Sbjct: 104 EDKDSNEETVFQQTESGSADVVDKTDVKQKDSDSSADDDHSHSKSGSVHSPQKPQ 158


>U62772-1|AAB04136.1|  763|Caenorhabditis elegans RNA helicase
           protein.
          Length = 763

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 419 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 309
           G  ++ G GF   +       G SSG GG     GFG
Sbjct: 75  GGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFG 111


>L19948-1|AAC27384.1|  763|Caenorhabditis elegans RNA helicase
           protein.
          Length = 763

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 419 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 309
           G  ++ G GF   +       G SSG GG     GFG
Sbjct: 75  GGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFG 111


>AF000197-1|AAB52901.2|  763|Caenorhabditis elegans Germ-line
           helicase protein 1 protein.
          Length = 763

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 419 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 309
           G  ++ G GF   +       G SSG GG     GFG
Sbjct: 75  GGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFG 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,891,780
Number of Sequences: 27780
Number of extensions: 205934
Number of successful extensions: 658
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)