BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0560 (650 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g11005.1 68415.m01177 glycine-rich protein 35 0.054 At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domai... 29 3.5 At3g63310.1 68416.m07121 expressed protein low similarity to N-m... 27 8.2 >At2g11005.1 68415.m01177 glycine-rich protein Length = 170 Score = 34.7 bits (76), Expect = 0.054 Identities = 25/77 (32%), Positives = 35/77 (45%) Frame = -1 Query: 419 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFGFCCCN*LIPSDSNSSCKSGIADN 240 G+ D G G ++ SD G SSG GG GGFG N + SDS+ + Sbjct: 29 GSGDGGGSGDGGGSRDSDGS-GDSSG-GGSGDSGGFGDNSDNNSVSSDSSGGGSRDGGGS 86 Query: 239 NDSANDSAGIMAMTSPF 189 D+ N G++A+ F Sbjct: 87 GDNGNTDDGVVALVMSF 103 >At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domain, PF03109: ABC1 family Length = 793 Score = 28.7 bits (61), Expect = 3.5 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +1 Query: 370 EVLATSENPKPTESAAPLSDVXIKSDTPHNKEASVN 477 ++LA + +PKPT+++ P S S +P + VN Sbjct: 39 QILAVATDPKPTQTSPPKSTTVNGSSSPSSASKVVN 74 >At3g63310.1 68416.m07121 expressed protein low similarity to N-methyl-D-aspartate receptor-associated protein [Drosophila melanogaster] GI:567104; contains Pfam profile PF01027: Uncharacterized protein family UPF0005 Length = 239 Score = 27.5 bits (58), Expect = 8.2 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Frame = -2 Query: 634 CILYHFXNLPPV--ICVAIVALATXFFFSDVCSYASGAATN*PALISAFVVVFVYLRT 467 C LY++ PV + + I +A F C++ SG +++A VV+ + L T Sbjct: 83 CPLYYYHQKHPVNYLLLGIFTVALAFAVGLTCAFTSGKVILESVILTAVVVISLTLYT 140 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,203,749 Number of Sequences: 28952 Number of extensions: 189169 Number of successful extensions: 547 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 525 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 546 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1354097952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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