Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0560
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g11005.1 68415.m01177 glycine-rich protein                          35   0.054
At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domai...    29   3.5  
At3g63310.1 68416.m07121 expressed protein low similarity to N-m...    27   8.2  

>At2g11005.1 68415.m01177 glycine-rich protein 
          Length = 170

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 25/77 (32%), Positives = 35/77 (45%)
 Frame = -1

Query: 419 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFGFCCCN*LIPSDSNSSCKSGIADN 240
           G+ D  G G    ++ SD   G SSG GG    GGFG    N  + SDS+         +
Sbjct: 29  GSGDGGGSGDGGGSRDSDGS-GDSSG-GGSGDSGGFGDNSDNNSVSSDSSGGGSRDGGGS 86

Query: 239 NDSANDSAGIMAMTSPF 189
            D+ N   G++A+   F
Sbjct: 87  GDNGNTDDGVVALVMSF 103


>At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 793

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 370 EVLATSENPKPTESAAPLSDVXIKSDTPHNKEASVN 477
           ++LA + +PKPT+++ P S     S +P +    VN
Sbjct: 39  QILAVATDPKPTQTSPPKSTTVNGSSSPSSASKVVN 74


>At3g63310.1 68416.m07121 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 239

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 634 CILYHFXNLPPV--ICVAIVALATXFFFSDVCSYASGAATN*PALISAFVVVFVYLRT 467
           C LY++    PV  + + I  +A  F     C++ SG       +++A VV+ + L T
Sbjct: 83  CPLYYYHQKHPVNYLLLGIFTVALAFAVGLTCAFTSGKVILESVILTAVVVISLTLYT 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,203,749
Number of Sequences: 28952
Number of extensions: 189169
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)