Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0559
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    41   1e-05
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   4.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   5.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   9.7  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   9.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 2/147 (1%)
 Frame = +1

Query: 22  WRKDGMHFSVGQDTLTTIDAGSLVFSQTKASDEGEYQCFAKSDFGVASTRATKLR-RTYI 198
           W +DG    + +     I+   ++ +  +ASD+  Y C AK+  G ++  + +++     
Sbjct: 544 WERDGRQLPINRKQKVFINGTLIIENVERASDQATYDCVAKNSQGYSARGSLEVQVMVPP 603

Query: 199 ETPAFEEKKVTVVEGKPFELRCPV-PGGYPKPTISWMRHHDEDGSTENFMDRRATYSPEG 375
           +   F+  + ++ EG    ++C V  G YP   ISW  +      T   +  RA+     
Sbjct: 604 QILPFDFGEDSINEGDGVSVQCTVSKGDYPL-NISWTLNGHFIDQTNGIVINRAS-KRVS 661

Query: 376 TLYFSNASLDDANDKTKLVCMASSPAA 456
           TL   N       + T   C+AS+ A+
Sbjct: 662 TLSIDNVQSTHVGNYT---CLASNSAS 685



 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = +1

Query: 79  AGSLVFSQTKASDEGEYQCFAKSDFGVASTRATKLRRTYIETPAFEEKKVTVVEGKPFEL 258
           AG+L+  + K  D G+Y C   +  G  S   T L  T       E +  T+  G+P   
Sbjct: 289 AGTLIIREAKVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLKAKIEPQVQTIDFGRPATF 347

Query: 259 RCPVPGGYPKPTISWMR 309
            C   G  P  TISW++
Sbjct: 348 TCNFEGN-PIKTISWLK 363



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 7/139 (5%)
 Frame = +1

Query: 88  LVFSQTKASDEGEYQCFAKSDFGVASTRATKLRRTYIETP----AFEEKKVTVVEGKPFE 255
           L     +  D+G YQCF ++D   A   A        E P    AF E+  TV  G    
Sbjct: 375 LRIESVRKEDKGMYQCFIRNDQESAEATAELKLGGRFEPPQIRHAFNEE--TVQPGNSVF 432

Query: 256 LRCPVPGGYPKPTISWMRHHDE-DGSTENFMDRRATYSPEGTLYFSNASLDDANDKTKLV 432
           L+C +  G P P I+W  +      S  N + +  T + +   +  N +    ND     
Sbjct: 433 LKC-IASGNPTPEITWELYGRRLSNSERNQIGQYVTVNGDVVSHL-NITAIHTNDGGLYR 490

Query: 433 CMASSP--AADEGVPVVTY 483
           C+ASS   +AD    +  Y
Sbjct: 491 CVASSKVGSADHSARINVY 509



 Score = 31.1 bits (67), Expect = 0.009
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 19   SWRKDGMHFSVGQDTLTTIDAGSLVFSQTKASDEGEYQCFAKSDFG 156
            +W+  G+ F+   D +     GSL       ++ GEY C  ++D+G
Sbjct: 1339 TWKIKGVQFTTS-DKIRQQPDGSLFIRDVSRNNAGEYSCHVENDYG 1383



 Score = 29.5 bits (63), Expect = 0.028
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
 Frame = +1

Query: 73   IDAGSLVFSQTKASDEGEYQCFAKSDFGVASTRATKLRRTYIETPAFEEK--KVTVVEGK 246
            ++ G+L  +  + ++EG Y C A +  G+ S  +  ++ +    P F+ K    T   G 
Sbjct: 755  VEDGTLTINNIQKTNEGYYLCEAVN--GIGSGLSAVIQISVQAPPQFDIKLRNQTSRRGD 812

Query: 247  PFELRCPVPGGYPKPTISWMRHHDEDGSTENFMDRRATYSPEGTLYFSNASLDDANDKTK 426
            P  L+C   G  P   +  + +   +   +N    R      G L   +    + +D   
Sbjct: 813  PAVLQCEAKGEKPIGILWNINNKRLEPKGDNRYTIREEILANGVLSGLSIKRTERSDSAL 872

Query: 427  LVCMASS 447
              C+A++
Sbjct: 873  FTCVATN 879



 Score = 29.1 bits (62), Expect = 0.036
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
 Frame = +1

Query: 85  SLVFSQTKASDEGEYQCFAKSDFGVASTRATKLRRTYIETPAFEEKKVTVVEGKPFELRC 264
           +L     +++  G Y C A +   V +T  T L          E       +G    + C
Sbjct: 662 TLSIDNVQSTHVGNYTCLASNSASV-TTYTTSLFINVPPRWILEPTDKAFAQGSDAAVEC 720

Query: 265 PVPGGYPKPTISWMRHHD-EDGSTENFMDRRATYSPE-GTLYFSN 393
              G +P+P ++W R      G  ++F         E GTL  +N
Sbjct: 721 KADG-FPRPVVTWKRATGVSPGDYKDFKPNNPDIKVEDGTLTINN 764



 Score = 24.2 bits (50), Expect = 1.0
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
 Frame = +1

Query: 28   KDGMHFSVGQDTLTTIDAGSLVFSQTKASDEGEYQCFAKSDFGVASTRATKLRRTYIETP 207
            K    +++ ++ L       L   +T+ SD   + C A + FG   T    + +   E P
Sbjct: 840  KGDNRYTIREEILANGVLSGLSIKRTERSDSALFTCVATNAFGSDDTSINMIVQEVPEVP 899

Query: 208  AFEEKKVTVVEGKPFELRCPVPGGYPKPTISWMRHHDE-----DGSTENFM 345
                 KV    G+  +L    P     P   +M  + +     +G+TE  +
Sbjct: 900  --YGLKVLDKSGRSVQLSWVAPFDGNSPITRYMIEYKQSKVSWEGNTERVL 948


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 356 RLIHPREPCTFPMRVLTMPTIK 421
           R  HP EP  F   +L +P ++
Sbjct: 351 RTTHPNEPGRFAKLLLRLPALR 372


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 251 KGFPSTTVTFFSSNAG 204
           +G+P+ TVT    N+G
Sbjct: 390 QGYPTNTVTILGPNSG 405


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 277 GYPKPTISWMRHHDEDGSTENFMDRRATYS 366
           G P PT S M HH  +  + N  + +A  S
Sbjct: 249 GLPAPTSSIMMHHLVNPQSLNHQEVKAECS 278


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 496 VTPASEPTYGELIPQYLSDHVVAKVGDLTYLYCIYGGT 609
           VTP + P    + PQ  S +  A      +LY  + G+
Sbjct: 149 VTPKTSPNEASMSPQSTSSNNSASPKACQFLYNQFPGS 186


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 496 VTPASEPTYGELIPQYLSDHVVAKVGDLTYLYCIYGGT 609
           VTP + P    + PQ  S +  A      +LY  + G+
Sbjct: 169 VTPKTSPNEASMSPQSTSSNNSASPKACQFLYNQFPGS 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,588
Number of Sequences: 336
Number of extensions: 3965
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)