Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0559
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    27   3.4  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    26   4.5  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   6.0  

>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
 Frame = +2

Query: 587 YTAFMAELPLAHP-----SWSKDGVN--VDNTY 664
           +TAF  EL ++HP     SWS D +N  VD +Y
Sbjct: 139 FTAFEVELRVSHPNWAFVSWSHDDLNELVDKSY 171


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 206 GVSMYVRRSLVALVLATPKSLLAKHWYSPSSEALVWLNTREPASIVV 66
           G  +Y  + L A +   PK L+ +H   P +   V +  +   SIVV
Sbjct: 33  GSPLYADKELYARIANAPKKLVGRHVCQPRTGLAVKIPQKSIFSIVV 79


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 346  DRRATYSPEGTLYFSNASLDDAND 417
            DRR+ YS   T + SNAS DDA++
Sbjct: 1471 DRRSIYSSAST-HASNASADDASN 1493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,279
Number of Sequences: 5004
Number of extensions: 66017
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)