BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0559 (700 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 27 3.4 SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac... 26 4.5 SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 6.0 >SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein Pvg2|Schizosaccharomyces pombe|chr 1|||Manual Length = 389 Score = 26.6 bits (56), Expect = 3.4 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 7/33 (21%) Frame = +2 Query: 587 YTAFMAELPLAHP-----SWSKDGVN--VDNTY 664 +TAF EL ++HP SWS D +N VD +Y Sbjct: 139 FTAFEVELRVSHPNWAFVSWSHDDLNELVDKSY 171 >SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 302 Score = 26.2 bits (55), Expect = 4.5 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = -3 Query: 206 GVSMYVRRSLVALVLATPKSLLAKHWYSPSSEALVWLNTREPASIVV 66 G +Y + L A + PK L+ +H P + V + + SIVV Sbjct: 33 GSPLYADKELYARIANAPKKLVGRHVCQPRTGLAVKIPQKSIFSIVV 79 >SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual Length = 1496 Score = 25.8 bits (54), Expect = 6.0 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +1 Query: 346 DRRATYSPEGTLYFSNASLDDAND 417 DRR+ YS T + SNAS DDA++ Sbjct: 1471 DRRSIYSSAST-HASNASADDASN 1493 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.315 0.133 0.404 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,009,279 Number of Sequences: 5004 Number of extensions: 66017 Number of successful extensions: 138 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 138 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (22.0 bits)
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