Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0559
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_05_0008 + 20042390-20042845,20043323-20043457,20043539-200436... 33 0.29
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 31 1.2
04_03_0316 + 14261942-14262506,14262710-14263134 29 2.7
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406... 29 3.5
12_02_0197 + 15392427-15392617,15392743-15393271 28 6.2
07_01_0026 + 190568-190829,192475-194534,194620-195168 28 8.2
06_03_0502 + 21493442-21494341 28 8.2
02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345 28 8.2
02_03_0122 - 15491106-15491509,15492668-15492695 28 8.2
>09_05_0008 +
20042390-20042845,20043323-20043457,20043539-20043679,
20043771-20043882,20044084-20044154,20044251-20044405,
20044484-20044595,20044932-20045033,20045116-20045176,
20045251-20045422,20045512-20045608,20045692-20045786,
20045881-20046014,20046208-20046422
Length = 685
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = -2
Query: 576 IANFRHHVVTQVLRDQLSIRGLRGGSHLR----DVIRDYGHTLVGGRRRGHADQLGFIVG 409
+ANFR +++ LR++L +G++ ++ D++ D GH LVG R G L F++
Sbjct: 106 LANFR---ISESLREKLKSKGIKALFPIQATTFDLVLD-GHDLVGRARTGQGKTLAFVLP 161
Query: 408 IVKTRI 391
I+++ +
Sbjct: 162 ILESLV 167
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 162 GDPKVAFGEALVLAFVRSFGLA-EHKRASVDSGERVLTDAKMHAVFSPR 19
GD +AF A A F LA E + ++ G+ L D ++HAVF PR
Sbjct: 85 GDLGIAFTLAKRYAAREQFDLAAEECQRALGRGDADLVDPQLHAVFEPR 133
>04_03_0316 + 14261942-14262506,14262710-14263134
Length = 329
Score = 29.5 bits (63), Expect = 2.7
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Frame = +1
Query: 118 EGEYQCFAKSDFGVASTRATKLR-RTY--IETPAFEEKKVTVVEGK---PFE-LRCPVPG 276
+G Y+C + + T T L RTY + + K+ VV G PF P+ G
Sbjct: 188 QGSYRCRSTPRSSNSGTSITSLPPRTYRAVREEFAAQVKLPVVPGNATDPFTCFSAPLRG 247
Query: 277 GYPKPTISWMRHHDEDGSTENFMDRRATYSPEGTLYFSNASLDDANDKTKLVCMA 441
PKP + M H E G+T P+ F DDA + ++++C+A
Sbjct: 248 --PKPDVPTMALHFE-GATMRL--------PQENYVFEVVDDDDAGNSSRIICLA 291
>04_04_0940 -
29539138-29539626,29540125-29540531,29540631-29540662,
29540809-29541086,29541164-29542515,29542616-29542874
Length = 938
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 367 PEGTLYFSNASLDDANDKTKLVCMASSPAADE--GVPVVTYYITQVTPASEPTYGELIPQ 540
P+ Y S+D + +C+ AA PV ++ P+Y ELI +
Sbjct: 474 PDRVSYRQFVSVDSETGMVRGLCIDVFVAAINLLAYPVPYRFVPFGNNRENPSYSELINK 533
Query: 541 YLSDHVVAKVGDLTYL 588
++D A VGD+T +
Sbjct: 534 IITDDFDAVVGDVTII 549
>12_02_0197 + 15392427-15392617,15392743-15393271
Length = 239
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 466 HPRRRQEKRPCRPAWFYRWHRQDSHWKSTGFPR 368
H RR+ +R RPAW H + W+ TG R
Sbjct: 141 HGARRRGRRRWRPAW----HERRGRWQETGLVR 169
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 469 PVVTYYITQVTPASEPTYGELIPQYLSDHVVAKVGDLT 582
PV Y+ P+YGEL+ + + A VGD++
Sbjct: 513 PVPVSYVVVGDGVKNPSYGELVQRVAEGELDAAVGDIS 550
>06_03_0502 + 21493442-21494341
Length = 299
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Frame = +1
Query: 178 KLRRTYIETPAFE----EKKVTVVEGKPFELRCPVPGGYPKPTISWMRHHDEDGSTENFM 345
+LR++ + AF EKK E + + P +P W+R DED E F
Sbjct: 172 RLRKSASDQSAFAHFEAEKKAAAAEVEREAVEARRPATTREPPRVWLRVADEDPEPEEFD 231
Query: 346 DRRATYSPE 372
D PE
Sbjct: 232 DEADDDEPE 240
>02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345
Length = 654
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 310 HHDEDGSTENFMD-RRATYSPEGTLYFSNASLD 405
HH++D TE+ R +Y P+ T Y S+ ++D
Sbjct: 68 HHNDDHHTESSAGVPRVSYEPDDTRYVSDVTVD 100
>02_03_0122 - 15491106-15491509,15492668-15492695
Length = 143
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 601 GGTXLSPPKLVQGRXKRGQHLQGSHNPP 684
GGT L P + V RGQH+Q H P
Sbjct: 116 GGTVLGPRRGVGDGGVRGQHIQQRHPQP 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.133 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,633,028
Number of Sequences: 37544
Number of extensions: 524277
Number of successful extensions: 1254
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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