Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0559
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    26   1.3  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    25   3.0  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            24   4.0  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    24   5.3  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   5.3  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   5.3  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    23   9.2  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    23   9.2  

>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 260 RSSK-GFPSTTVTFFSSNAGVSMYVRRSLVALVLATPK 150
           RS K G PST V+  S+N   S    R+ V L LA+P+
Sbjct: 189 RSLKSGNPSTAVSSSSTNNNTSNISNRNQVNLPLASPE 226


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 622 PKLVQGRXKRGQHLQGSHNPPQQVLW 699
           P+L Q + ++ Q  Q     PQQ+LW
Sbjct: 395 PRLQQQQQQQQQSQQQQQQQPQQLLW 420


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 226 VTVVEGKPFELRCPVPGGYPKPTISWMRHHDEDGSTENFMDRRATYSPE 372
           VT++   P  +  P+P   P P I +++     G +E   ++RA    E
Sbjct: 626 VTILVPYPIIIPLPLPIPVPIPVIDFLKAALPKGESEKADEKRAEQKDE 674


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 611  PLAHPSWSKDGVNVDNTYKDRI 676
            P    SW+ + V V NT  DR+
Sbjct: 1381 PRGRHSWASNSVEVPNTCSDRL 1402


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = -1

Query: 475 LRAHPRRRQEKRPC----RPAWFYR 413
           LR +P+   E RPC    +PAW  R
Sbjct: 285 LRTYPQGDSEGRPCSKAEKPAWMRR 309


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +3

Query: 405  RCQR*NQAGLHGLFSCRRRGCARSHVLHHASDSRLGAHV 521
            RC    ++  H +F C R    R+ +LH      L  H+
Sbjct: 1018 RCPGVAESAEHAMFECPRFDSTRTELLHGVVPETLLEHM 1056


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 481 YYITQVTPASEP-TYGELIPQYLSDHVVAKVGDLTYL 588
           +Y+ +     +P TY   +     DHV++ + +++YL
Sbjct: 540 FYLYRPEELFQPNTYNRFLVAPTGDHVISLIDEISYL 576


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 241 GKPFELRCPVPGGYPKPTIS 300
           G+P  +R P P G P+P IS
Sbjct: 261 GQPPPIRPPNPMGGPRPQIS 280


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.315    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,929
Number of Sequences: 2352
Number of extensions: 16573
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)