Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0559
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14780.1 68417.m02273 protein kinase, putative similar to pro... 29 2.2
At3g22750.1 68416.m02869 protein kinase, putative similar to pro... 29 3.0
At3g56480.1 68416.m06281 myosin heavy chain-related contains wea... 29 3.9
At2g25280.1 68415.m03024 expressed protein 29 3.9
At1g04430.1 68414.m00434 dehydration-responsive protein-related ... 29 3.9
At4g15490.1 68417.m02367 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.2
At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identic... 28 5.2
At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identic... 28 5.2
At5g13520.1 68418.m01561 peptidase M1 family protein similar to ... 28 6.8
At5g04360.1 68418.m00428 pullulanase, putative / starch debranch... 28 6.8
At4g15500.1 68417.m02368 UDP-glucoronosyl/UDP-glucosyl transfera... 28 6.8
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 28 6.8
At5g41830.1 68418.m05093 F-box family protein-related contains a... 27 9.0
At1g43760.1 68414.m05034 hypothetical protein 27 9.0
>At4g14780.1 68417.m02273 protein kinase, putative similar to
protein kinase ATMRK1 [Arabidopsis thaliana]
gi|2351097|dbj|BAA22079
Length = 364
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 145 SDFGVASTRATKLRRTYIETPAFEEKKVTVVEGKPFELRCPV 270
+DFGVA A + ET V++GKP+ RC V
Sbjct: 223 ADFGVARVEALNPKDMTGETGTLGYMAPEVIDGKPYNRRCDV 264
>At3g22750.1 68416.m02869 protein kinase, putative similar to
protein kinase ATMRK1 [Arabidopsis thaliana]
gi|2351097|dbj|BAA22079
Length = 378
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 124 EYQCFAK-SDFGVASTRATKLRRTYIETPAFEEKKVTVVEGKPFELRCPV 270
+YQ K +DFGVA A + ET V++GKP+ RC V
Sbjct: 229 DYQRNLKIADFGVARVEAQNPKDMTGETGTLGYMAPEVLDGKPYNRRCDV 278
>At3g56480.1 68416.m06281 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, cardiac muscle alpha
isoform (MyHC-alpha) (Alpha isomyosin) (Fragment)
(Swiss-Prot:P04460) [Oryctolagus cuniculus]
Length = 490
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 618 AKGSSAINAV*IRQIANFRHHVVTQVLRDQLS-IRGLRGGSHLRDV 484
A S N +R++A+ HV+ + LRD L +RG G + +DV
Sbjct: 86 AAAVSLANEAKLREVASLEGHVMLKKLRDALEYMRGRTDGQNKQDV 131
>At2g25280.1 68415.m03024 expressed protein
Length = 291
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 466 VPVVTYYITQVTPASEPTYGELIPQYLSD 552
V VV + V+P +E YGEL+ +Y+ D
Sbjct: 147 VKVVPILVGAVSPENEAMYGELLAKYVDD 175
>At1g04430.1 68414.m00434 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 623
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +1
Query: 7 GVEYSWRKDGMHFSVGQDTLTTIDAGSLVFSQTKASDEGEYQCFAKSDFGVAS 165
G + S+ G HF G D A L FS +DEG + GVAS
Sbjct: 176 GEKISFPGGGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVAS 228
>At4g15490.1 68417.m02367 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase ;simalr to
UDP-glucose:sinapate glucosyltransferase GI:9794913 from
[Brassica napus]
Length = 479
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = -3
Query: 122 PSSEALVWLNTREPASIV 69
P+S+ + WL++REP+S+V
Sbjct: 266 PASDCMEWLDSREPSSVV 283
>At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identical
to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
Length = 344
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 145 SDFGVASTRATKLRRTYIETPAFEEKKVTVVEGKPFELRCPV 270
+DFGVA A + ET V+EGKP+ +C V
Sbjct: 250 ADFGVARVEAQNPQDMTGETGTLGYMAPEVLEGKPYNRKCDV 291
>At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identical
to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
Length = 391
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 145 SDFGVASTRATKLRRTYIETPAFEEKKVTVVEGKPFELRCPV 270
+DFGVA A + ET V+EGKP+ +C V
Sbjct: 250 ADFGVARVEAQNPQDMTGETGTLGYMAPEVLEGKPYNRKCDV 291
>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
hydrolase) {Homo sapiens}; contains Pfam profile
PF01433: Peptidase family M1
Length = 616
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 191 VRRSLVALVLATPKSLLAKHWYSPSSEALVWLN 93
+R + V +VL+ SLL + SPS+ AL WL+
Sbjct: 81 IRGTEVVVVLSGQSSLLIVYSTSPSASALQWLS 113
>At5g04360.1 68418.m00428 pullulanase, putative / starch debranching
enzyme, putative similar to pullulanase [Spinacia
oleracea] GI:634093 (EC 3.2.1.41); contains Pfam
profiles PF00128: Alpha amylase catalytic domain,
PF02922: Isoamylase N-terminal domain
Length = 965
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 562 PPRGHSSTEGSALHTWAPRRESLA*C 485
P H + EG +LH WAP ++++ C
Sbjct: 207 PLGAHFTPEGVSLHLWAPTAQAVSVC 232
>At4g15500.1 68417.m02368 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 475
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -3
Query: 122 PSSEALVWLNTREPASIV 69
P S+ + WL++REP+S+V
Sbjct: 262 PDSDCIEWLDSREPSSVV 279
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 34 GMHFSVGQDTLTTIDAGSLVFSQTKASDEGEYQCFAKS 147
G+ S+GQ+T T+ AGS +FS + E Q F K+
Sbjct: 85 GIAKSLGQETPFTMIAGSEIFSLEMSKTEALTQAFRKA 122
>At5g41830.1 68418.m05093 F-box family protein-related contains a
novel domain similar to F-box that is shared among other
proteins in Arabidopsis; similar to proteins At3g54160,
At1g47920 (syntaxin SYP81), At3g44180, At1g56610,
At3g58890, At1g48390, At3g59270 [Arabidopsis thaliana]
Length = 463
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 107 LVWLNTREPASIVVSVS*PTLKCMPSFRHE 18
L+W + EP V+VS PTLK + R E
Sbjct: 162 LIWEESSEPEPCYVTVSVPTLKILKFSRFE 191
>At1g43760.1 68414.m05034 hypothetical protein
Length = 626
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 334 QWNRPRHDVSSSLWSASGSPRALDSG 257
+WN R + + SGSPRAL SG
Sbjct: 143 KWNISRSSAADHISKVSGSPRALVSG 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.133 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,417,953
Number of Sequences: 28952
Number of extensions: 378779
Number of successful extensions: 833
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -