Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0558
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    28   0.069
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    28   0.069
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   3.4  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   8.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   8.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.0  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 28.3 bits (60), Expect = 0.069
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 466 PGPCSRAPSGRDG--GRWPGTLGSWTPRR 386
           PGP S+AP+ +       P  +G W PRR
Sbjct: 95  PGPLSQAPASQQSLDASDPDAMGKWCPRR 123


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 0.069
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 466 PGPCSRAPSGRDG--GRWPGTLGSWTPRR 386
           PGP S+AP+ +       P  +G W PRR
Sbjct: 251 PGPLSQAPASQQSLDASDPDAMGKWCPRR 279


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 171 MVFILYTIVFVEKLVIVC*FQL 236
           ++FI+ TIVF EK   +  F+L
Sbjct: 47  VIFIILTIVFFEKRSALSPFEL 68


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 736 SNSXMHPWXSVYPTGHXLGGVTIRGQNXVSFHH 638
           +N+ MH W + Y  G  +G      +  +  HH
Sbjct: 21  ANAPMHSWYAGYHQGAQMGPEQQMWEPQMWHHH 53


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 736 SNSXMHPWXSVYPTGHXLGGVTIRGQNXVSFHH 638
           +N+ MH W + Y  G  +G      +  +  HH
Sbjct: 21  ANAPMHSWYAGYHQGAQMGPEQQMWEPQMWHHH 53


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 307 GSIGAKDHLITETLLR 354
           G++  K+HLI + LLR
Sbjct: 165 GTLTVKEHLIFQALLR 180


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 307 GSIGAKDHLITETLLR 354
           G++  K+HLI + LLR
Sbjct: 165 GTLTVKEHLIFQALLR 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,080
Number of Sequences: 336
Number of extensions: 3817
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)