Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0558
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 29 0.71
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 2.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.2
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 2.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 2.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 2.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 2.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.2
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 26 5.0
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 26 5.0
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 8.7
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 8.7
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 29.1 bits (62), Expect = 0.71
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -3
Query: 718 PWXSVYPTGHXLGGVTIRGQNXVSFHHLSVRGPRPM 611
P SVY LG V +RG+ VS LSV+GP PM
Sbjct: 54 PSNSVYEEKRMLGLVILRGEFIVS---LSVQGPPPM 86
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 228 ISRLSPASQQTQWCTI*RPFRSDLHIVHHY-KNQNL 124
IS L+P++ + W T+ ++D IV+ Y KN NL
Sbjct: 1296 ISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNL 1331
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 228 ISRLSPASQQTQWCTI*RPFRSDLHIVHHY-KNQNL 124
IS L+P++ + W T+ ++D IV+ Y KN NL
Sbjct: 1296 ISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNL 1331
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 228 ISRLSPASQQTQWCTI*RPFRSDLHIVHHY-KNQNL 124
IS L+P++ + W T+ ++D IV+ Y KN NL
Sbjct: 1296 ISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNL 1331
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 228 ISRLSPASQQTQWCTI*RPFRSDLHIVHHY-KNQNL 124
IS L+P++ + W T+ ++D IV+ Y KN NL
Sbjct: 1296 ISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNL 1331
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 228 ISRLSPASQQTQWCTI*RPFRSDLHIVHHY-KNQNL 124
IS L+P++ + W T+ ++D IV+ Y KN NL
Sbjct: 1296 ISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNL 1331
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 421 SDRHLALMAHASKDLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQYVTXGAGXGEQ 600
+D HL++ + +S LD S + PS +LRD+E+ + + H + +Q
Sbjct: 298 ADLHLSIASASSHKNIFSGLDVFSNVFHGPSTTLRDREHDMRNRSFDHSTLAHYEAVKQQ 357
Query: 601 RL 606
RL
Sbjct: 358 RL 359
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 228 ISRLSPASQQTQWCTI*RPFRSDLHIVHHY-KNQNL 124
IS L+P++ + W T+ ++D IV+ Y KN NL
Sbjct: 1296 ISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNL 1331
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 228 ISRLSPASQQTQWCTI*RPFRSDLHIVHHY-KNQNL 124
IS L+P++ + W T+ ++D IV+ Y KN NL
Sbjct: 1296 ISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNL 1331
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 228 ISRLSPASQQTQWCTI*RPFRSDLHIVHHY-KNQNL 124
IS L+P++ + W T+ ++D IV+ Y KN NL
Sbjct: 1296 ISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNL 1331
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 228 ISRLSPASQQTQWCTI*RPFRSDLHIVHHY-KNQNL 124
IS L+P++ + W T+ ++D IV+ Y KN NL
Sbjct: 1296 ISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNL 1331
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 228 ISRLSPASQQTQWCTI*RPFRSDLHIVHHY-KNQNL 124
IS L+P++ + W T+ ++D IV+ Y KN NL
Sbjct: 1296 ISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNL 1331
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 228 ISRLSPASQQTQWCTI*RPFRSDLHIVHHY-KNQNL 124
IS L+P++ + W T+ ++D IV+ Y KN NL
Sbjct: 1296 ISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNL 1331
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 87 KSPIDLDRYHSALNFDFYNGVQYEDHCEMVFILYT 191
++P++ Y+ LNF YN + +H + ++ +T
Sbjct: 268 ETPLETFSYYGPLNFFVYNAGYHIEHHDFPYVAWT 302
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 232 NFVMGRYAMLLLAINTVAAMGFIPHGSIGAKDHL 333
+F+ R +L+ AI+T +GFI +GSI +H+
Sbjct: 347 DFLKNRGIVLIAAISTTM-IGFIVYGSIDIMNHI 379
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 469 NEQLDYDSLIDGN--PSPSLRDQEYLQHSSLWGHQYVTXGAGXGEQRLRPSGVVP 627
NE D+ +++ + P P + EYL S H V + G R+R SG +P
Sbjct: 734 NEDFDWGVVVNVSKRPLPKGQSNEYLPQESYIVHTLVMVASDTGPLRIR-SGHLP 787
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 369 YGQRLQRRGVQLPRVPGQRPPSRPDGAREQGPGERAARL 485
+G+RL+R G L ++PP G++ G ER R+
Sbjct: 68 HGRRLERGGGVLRVEWAKQPPPSGPGSKRGGRRERGGRV 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,070
Number of Sequences: 5004
Number of extensions: 60149
Number of successful extensions: 164
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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