Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0558
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0529 - 3968813-3968983,3969060-3969116,3969215-3969526,396...    30   1.7  
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249...    29   3.0  
07_03_0408 - 17798033-17798181,17798349-17798616,17798707-177987...    29   3.9  
12_01_0060 - 499291-501228                                             29   5.2  
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45...    29   5.2  
09_04_0646 - 19194261-19195730                                         29   5.2  
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793           28   6.9  
05_04_0454 + 21383068-21384525                                         28   9.1  

>03_01_0529 -
           3968813-3968983,3969060-3969116,3969215-3969526,
           3969606-3970298,3971473-3971763
          Length = 507

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 150 VHHYKNQNLTRCDIYQDLLDS*ITVETCEPDTLRLHSFPG*RRTLK 13
           ++ + + NLT+ D+   L +  + V   +PD  +L SFPG   TL+
Sbjct: 384 INGFSSLNLTKLDVLSGLPEVKLGVSYNQPDGQKLQSFPGDLDTLE 429


>02_04_0403 -
           22622014-22622075,22622159-22622350,22624834-22624910,
           22625026-22625039
          Length = 114

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -3

Query: 676 VTIRGQNXVSFHHLSVRG 623
           +T++G+N V+F HLSVRG
Sbjct: 45  LTLKGKNPVTFDHLSVRG 62


>07_03_0408 -
           17798033-17798181,17798349-17798616,17798707-17798797,
           17800458-17800585,17800760-17800891
          Length = 255

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 346 LLREVVERMGKDFNDAASSYLEFPASDRHLAL---MAHASKDLENEQLDYDS 492
           L++E+    G D +    ++L FP SD    +   +AH   D + E+LDYD+
Sbjct: 165 LVKEICPTCG-DHDPKEDTWLMFPGSDIFARVPFHVAHTVLDKDQERLDYDT 215


>12_01_0060 - 499291-501228
          Length = 645

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/78 (21%), Positives = 33/78 (42%)
 Frame = -2

Query: 260 SMAYRPITKLKLADYHQLLNKHNGVQYEDHFAVIFILYTXXXXXX*RAVISIKIYWTLES 81
           +M Y P T++ + D      +H  V + +  A+ F L         R   ++++     +
Sbjct: 551 TMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHT 610

Query: 80  QSKLVNRTRLDFIHFRDD 27
             KL++R     I  RD+
Sbjct: 611 AIKLISRITHREIIVRDN 628


>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
          Length = 1430

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = -2

Query: 260  SMAYRPITKLKLADYHQLLNKHNGVQYEDHFAVIFILYTXXXXXX*RAVISIKIYWTLES 81
            +M Y P T++ + D      +H  V + +  A+ F L         R   ++++     +
Sbjct: 1336 TMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHT 1395

Query: 80   QSKLVNRTRLDFIHFRDD 27
              KLV+R     I  RD+
Sbjct: 1396 AIKLVSRITHREIIVRDN 1413


>09_04_0646 - 19194261-19195730
          Length = 489

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 323 FAPIEPWGIKPMAATVFIAKSSMAYRPITKLKLAD 219
           F    PWG +P  A  F AKS ++  PIT  + AD
Sbjct: 297 FTVYGPWG-RPDMAYFFFAKSIVSGEPITLFRAAD 330


>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
          Length = 783

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 387 RRGVQLPRVPGQRPPSRPDGAREQGP 464
           R GVQ P+ PG+R  SR   +   GP
Sbjct: 16  RSGVQSPKNPGKRAASRSGASSSDGP 41


>05_04_0454 + 21383068-21384525
          Length = 485

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 423 RPPSRPDGAREQGP--GERAAR 482
           RPP  PDGAR  GP   ER A+
Sbjct: 106 RPPDDPDGARSPGPSHSERMAK 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,810,295
Number of Sequences: 37544
Number of extensions: 455058
Number of successful extensions: 1180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)