BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0558 (750 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_01_0529 - 3968813-3968983,3969060-3969116,3969215-3969526,396... 30 1.7 02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 29 3.0 07_03_0408 - 17798033-17798181,17798349-17798616,17798707-177987... 29 3.9 12_01_0060 - 499291-501228 29 5.2 11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 29 5.2 09_04_0646 - 19194261-19195730 29 5.2 11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793 28 6.9 05_04_0454 + 21383068-21384525 28 9.1 >03_01_0529 - 3968813-3968983,3969060-3969116,3969215-3969526, 3969606-3970298,3971473-3971763 Length = 507 Score = 30.3 bits (65), Expect = 1.7 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = -1 Query: 150 VHHYKNQNLTRCDIYQDLLDS*ITVETCEPDTLRLHSFPG*RRTLK 13 ++ + + NLT+ D+ L + + V +PD +L SFPG TL+ Sbjct: 384 INGFSSLNLTKLDVLSGLPEVKLGVSYNQPDGQKLQSFPGDLDTLE 429 >02_04_0403 - 22622014-22622075,22622159-22622350,22624834-22624910, 22625026-22625039 Length = 114 Score = 29.5 bits (63), Expect = 3.0 Identities = 11/18 (61%), Positives = 16/18 (88%) Frame = -3 Query: 676 VTIRGQNXVSFHHLSVRG 623 +T++G+N V+F HLSVRG Sbjct: 45 LTLKGKNPVTFDHLSVRG 62 >07_03_0408 - 17798033-17798181,17798349-17798616,17798707-17798797, 17800458-17800585,17800760-17800891 Length = 255 Score = 29.1 bits (62), Expect = 3.9 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = +1 Query: 346 LLREVVERMGKDFNDAASSYLEFPASDRHLAL---MAHASKDLENEQLDYDS 492 L++E+ G D + ++L FP SD + +AH D + E+LDYD+ Sbjct: 165 LVKEICPTCG-DHDPKEDTWLMFPGSDIFARVPFHVAHTVLDKDQERLDYDT 215 >12_01_0060 - 499291-501228 Length = 645 Score = 28.7 bits (61), Expect = 5.2 Identities = 17/78 (21%), Positives = 33/78 (42%) Frame = -2 Query: 260 SMAYRPITKLKLADYHQLLNKHNGVQYEDHFAVIFILYTXXXXXX*RAVISIKIYWTLES 81 +M Y P T++ + D +H V + + A+ F L R ++++ + Sbjct: 551 TMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHT 610 Query: 80 QSKLVNRTRLDFIHFRDD 27 KL++R I RD+ Sbjct: 611 AIKLISRITHREIIVRDN 628 >11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293 Length = 1430 Score = 28.7 bits (61), Expect = 5.2 Identities = 18/78 (23%), Positives = 33/78 (42%) Frame = -2 Query: 260 SMAYRPITKLKLADYHQLLNKHNGVQYEDHFAVIFILYTXXXXXX*RAVISIKIYWTLES 81 +M Y P T++ + D +H V + + A+ F L R ++++ + Sbjct: 1336 TMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHT 1395 Query: 80 QSKLVNRTRLDFIHFRDD 27 KLV+R I RD+ Sbjct: 1396 AIKLVSRITHREIIVRDN 1413 >09_04_0646 - 19194261-19195730 Length = 489 Score = 28.7 bits (61), Expect = 5.2 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 323 FAPIEPWGIKPMAATVFIAKSSMAYRPITKLKLAD 219 F PWG +P A F AKS ++ PIT + AD Sbjct: 297 FTVYGPWG-RPDMAYFFFAKSIVSGEPITLFRAAD 330 >11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793 Length = 783 Score = 28.3 bits (60), Expect = 6.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 387 RRGVQLPRVPGQRPPSRPDGAREQGP 464 R GVQ P+ PG+R SR + GP Sbjct: 16 RSGVQSPKNPGKRAASRSGASSSDGP 41 >05_04_0454 + 21383068-21384525 Length = 485 Score = 27.9 bits (59), Expect = 9.1 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%) Frame = +3 Query: 423 RPPSRPDGAREQGP--GERAAR 482 RPP PDGAR GP ER A+ Sbjct: 106 RPPDDPDGARSPGPSHSERMAK 127 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,810,295 Number of Sequences: 37544 Number of extensions: 455058 Number of successful extensions: 1180 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1180 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1992480932 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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