Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0558
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41471| Best HMM Match : Cupin_4 (HMM E-Value=0.31)                  29   5.3  
SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)                   29   5.3  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   28   7.0  
SB_59333| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_7054| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  

>SB_41471| Best HMM Match : Cupin_4 (HMM E-Value=0.31)
          Length = 406

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 372 GQRLQRRGVQLPRVPGQRPPS 434
           G RL+R+G  +P+ P Q+PPS
Sbjct: 5   GNRLRRKGSIIPQSPPQQPPS 25


>SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)
          Length = 598

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 397 SSYLEFPASDRHLALMAHASKDLENEQLDYD 489
           +S+++FP ++R   L   +S D+  E+ +YD
Sbjct: 364 TSFIDFPVTERKSLLETSSSSDMTKERREYD 394


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 412 FPASDRHLALMAHASKDLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQY 570
           FPA+D    + AHA K LEN     D +I+ +P+   R    L    +   QY
Sbjct: 259 FPATDSEEEMNAHALKCLENTS-TVDQVIESDPTDP-RSSHSLLRDQIEAFQY 309


>SB_59333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 390 RGVQLPRVPGQRPPSRPDGAREQ 458
           RG  LPR PG + P RP   R+Q
Sbjct: 33  RGQTLPRAPGGQNPLRPPWTRQQ 55


>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 412 FPASDRHLALMAHASKDLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQY 570
           FPA+D    + AHA K LEN     D +I+ +P+   R    L    +   QY
Sbjct: 259 FPATDSEEEMNAHALKCLENTS-TVDQVIESDPTDP-RSSHSLLRDQIEAFQY 309


>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1175

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 390 RGVQLPRVPGQRPPSRPDGAREQ 458
           RG  LPR PG + P RP   R+Q
Sbjct: 590 RGQTLPRAPGGQNPLRPPWTRQQ 612


>SB_7054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 406 LEFPASDRHLALMAHASKDLENEQLDYDSLIDGNPSPSLRD 528
           + F  S++ LAL+ +AS+++      YD   DG P PS  D
Sbjct: 1   VSFIPSEKRLALLTNASREVPRSSSSYDDGGDG-PVPSDSD 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,155,315
Number of Sequences: 59808
Number of extensions: 488271
Number of successful extensions: 1124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)