Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0558
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U07681-1|AAA85639.1| 366|Homo sapiens NAD(H)-specific isocitrat... 33 1.4
BC021967-1|AAH21967.1| 366|Homo sapiens isocitrate dehydrogenas... 33 1.4
AL442090-1|CAC09449.1| 288|Homo sapiens hypothetical protein pr... 33 1.4
AK222973-1|BAD96693.1| 366|Homo sapiens isocitrate dehydrogenas... 33 1.4
AK124944-1|BAC86001.1| 129|Homo sapiens protein ( Homo sapiens ... 31 3.3
BC078665-1|AAH78665.1| 775|Homo sapiens GRIP and coiled-coil do... 30 7.7
BC014100-1|AAH14100.1| 775|Homo sapiens GRIP and coiled-coil do... 30 7.7
AK025688-1|BAB15218.1| 434|Homo sapiens protein ( Homo sapiens ... 30 7.7
AF525417-1|AAM91948.1| 775|Homo sapiens Golgi coiled coil prote... 30 7.7
>U07681-1|AAA85639.1| 366|Homo sapiens NAD(H)-specific isocitrate
dehydrogenase alpha subunit precursor protein.
Length = 366
Score = 32.7 bits (71), Expect = 1.4
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 265 LAINTVAAMGFIPHGSIGAKDHLITETLLREVVERMGKDFNDAASSYLEFPASDRHLALM 444
L + +G P G+IGA I E++ + GKD + + L RH+ L
Sbjct: 262 LCAGLIGGLGVTPSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLF 321
Query: 445 AHASK 459
HA++
Sbjct: 322 DHAAR 326
>BC021967-1|AAH21967.1| 366|Homo sapiens isocitrate dehydrogenase 3
(NAD+) alpha protein.
Length = 366
Score = 32.7 bits (71), Expect = 1.4
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 265 LAINTVAAMGFIPHGSIGAKDHLITETLLREVVERMGKDFNDAASSYLEFPASDRHLALM 444
L + +G P G+IGA I E++ + GKD + + L RH+ L
Sbjct: 262 LCAGLIGGLGVTPSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLF 321
Query: 445 AHASK 459
HA++
Sbjct: 322 DHAAR 326
>AL442090-1|CAC09449.1| 288|Homo sapiens hypothetical protein
protein.
Length = 288
Score = 32.7 bits (71), Expect = 1.4
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 265 LAINTVAAMGFIPHGSIGAKDHLITETLLREVVERMGKDFNDAASSYLEFPASDRHLALM 444
L + +G P G+IGA I E++ + GKD + + L RH+ L
Sbjct: 184 LCAGLIGGLGVTPSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLF 243
Query: 445 AHASK 459
HA++
Sbjct: 244 DHAAR 248
>AK222973-1|BAD96693.1| 366|Homo sapiens isocitrate dehydrogenase 3
(NAD+) alpha precursor variant protein.
Length = 366
Score = 32.7 bits (71), Expect = 1.4
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 265 LAINTVAAMGFIPHGSIGAKDHLITETLLREVVERMGKDFNDAASSYLEFPASDRHLALM 444
L + +G P G+IGA I E++ + GKD + + L RH+ L
Sbjct: 262 LCAGLIGGLGVTPSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLF 321
Query: 445 AHASK 459
HA++
Sbjct: 322 DHAAR 326
>AK124944-1|BAC86001.1| 129|Homo sapiens protein ( Homo sapiens
cDNA FLJ42954 fis, clone BRSTN2008457. ).
Length = 129
Score = 31.5 bits (68), Expect = 3.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 466 PGPCSRAPSGRDGGRWP 416
PGPC P G+ GRWP
Sbjct: 85 PGPCLGTPGGKQDGRWP 101
>BC078665-1|AAH78665.1| 775|Homo sapiens GRIP and coiled-coil
domain containing 1 protein.
Length = 775
Score = 30.3 bits (65), Expect = 7.7
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = +1
Query: 340 ETLLREVVERMGKDFNDAASSYLEFPASDRHLALMAHASKDLENEQLDYDSLIDGNP 510
+ L R+ +ER DF D E R AL KDLE EQL +L G P
Sbjct: 560 QQLHRQELERCQLDFRDRTLKLEEELHKQRDRALAVLTEKDLELEQLRSVALASGLP 616
>BC014100-1|AAH14100.1| 775|Homo sapiens GRIP and coiled-coil
domain containing 1 protein.
Length = 775
Score = 30.3 bits (65), Expect = 7.7
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = +1
Query: 340 ETLLREVVERMGKDFNDAASSYLEFPASDRHLALMAHASKDLENEQLDYDSLIDGNP 510
+ L R+ +ER DF D E R AL KDLE EQL +L G P
Sbjct: 560 QQLHRQELERCQLDFRDRTLKLEEELHKQRDRALAVLTEKDLELEQLRSVALASGLP 616
>AK025688-1|BAB15218.1| 434|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22035 fis, clone HEP08838. ).
Length = 434
Score = 30.3 bits (65), Expect = 7.7
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = +1
Query: 340 ETLLREVVERMGKDFNDAASSYLEFPASDRHLALMAHASKDLENEQLDYDSLIDGNP 510
+ L R+ +ER DF D E R AL KDLE EQL +L G P
Sbjct: 219 QQLHRQELERCQLDFRDRTLKLEEELHKQRDRALAVLTEKDLELEQLRSVALASGLP 275
>AF525417-1|AAM91948.1| 775|Homo sapiens Golgi coiled coil protein
1 protein.
Length = 775
Score = 30.3 bits (65), Expect = 7.7
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = +1
Query: 340 ETLLREVVERMGKDFNDAASSYLEFPASDRHLALMAHASKDLENEQLDYDSLIDGNP 510
+ L R+ +ER DF D E R AL KDLE EQL +L G P
Sbjct: 560 QQLHRQELERCQLDFRDRTLKLEEELHKQRDRALAVLTEKDLELEQLRSVALASGLP 616
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,549,735
Number of Sequences: 237096
Number of extensions: 2465630
Number of successful extensions: 9756
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9754
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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