Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0558
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    43   2e-04
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    29   2.7  
AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical...    29   4.7  
AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical...    29   4.7  
Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical pr...    28   6.2  
M77697-4|AAA27900.4|  493|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U58752-1|AAB00664.1|  377|Caenorhabditis elegans P38 map kinase ...    28   8.1  

>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +3

Query: 663 PRIVTPPNXCPVGYTEXQGCIXEFENPA 746
           P    PPN CPVG+T+  GC+ EFEN A
Sbjct: 87  PAYCEPPNPCPVGFTKEHGCLEEFENSA 114



 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +2

Query: 632 RQMVKTDXVLPAYCNPAQXMP 694
           RQ VK D VLPAYC P    P
Sbjct: 77  RQEVKVDNVLPAYCEPPNPCP 97



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 523 RDQEYLQHSSLWGHQYVTXGAGXGEQRL 606
           RD E L   S +G ++++ GAG GEQ+L
Sbjct: 41  RDSENLPDLSSFGVKHISGGAGEGEQKL 68


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -2

Query: 320  APIEPWGIKPMAATVFIAKSSMAYRPITKLKLADYH---QLLNKHNGVQYEDHFAVI 159
            API      P AA +    SS+  +P+ K+ L + H   QL++K N  +  DH  VI
Sbjct: 1533 APITNGDCAPSAANLLFECSSLPEKPVEKVLLVNGHGSTQLISKLNDTR--DHILVI 1587


>AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 454 SRAPSGRDGGRWPGTLGSWTPRR*SLCP 371
           S   S  DGG WP T   W  R    CP
Sbjct: 430 SECASPEDGGEWPKTRTEWAERTYVECP 457


>AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 454 SRAPSGRDGGRWPGTLGSWTPRR*SLCP 371
           S   S  DGG WP T   W  R    CP
Sbjct: 430 SECASPEDGGEWPKTRTEWAERTYVECP 457


>Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical
           protein F14D7.2 protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 387 RRGVQLPRVPGQRPPSRPDGAREQGPGE 470
           +R  Q+P  P +RP S P G R   P +
Sbjct: 219 KRETQIPNYPRRRPDSDPPGGRVTSPSD 246


>M77697-4|AAA27900.4|  493|Caenorhabditis elegans Hypothetical
           protein B0303.7 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 308 PWGIKPMAATVFIAKSSMAYRPITKLKLADYHQLLNKHNGVQYEDHFAVI 159
           P+G    A +  IA+ + A+ P   +   DYH    KH  V   DH  ++
Sbjct: 412 PYGSPKKAPSKGIAEIACAFSPKKAVATGDYHSEDPKHLYVTRGDHLLIV 461


>U58752-1|AAB00664.1|  377|Caenorhabditis elegans P38 map kinase
           family protein 1 protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 177 RPFRSDLHIVHHYKNQNLTRCDIYQDLLD 91
           RPF+S +H    Y+   L RC  +++++D
Sbjct: 68  RPFQSIIHARRTYRELRLLRCMCHENIID 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,843,099
Number of Sequences: 27780
Number of extensions: 360716
Number of successful extensions: 863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)