Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0558
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28720.1 68416.m03586 expressed protein                             29   3.3  
At3g02440.1 68416.m00231 expressed protein                             28   5.8  
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si...    28   7.6  

>At3g28720.1 68416.m03586 expressed protein 
          Length = 687

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 3   QLRSLVFFVIPEMNE-V*ACPVHKFRL*FKSPIDLDRYHSALNF 131
           +LR +   V  E NE     PV+ F L   +P+ LDRYH ++ F
Sbjct: 416 ELRRVAGIVEEEGNEFARVLPVYVFDLDINTPLLLDRYHQSVAF 459


>At3g02440.1 68416.m00231 expressed protein
          Length = 373

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 385 NDAASSYLEFPASDRHLALMAHASKDLENEQLDYDSLIDGN----PSPSLRDQEYLQHSS 552
           N ++SS +  P+   H +  + + K  ++E   YD+  D       S SL + + L  SS
Sbjct: 46  NSSSSSAISSPSRYNHSSSSSDSYKTEDSEPSSYDNDYDDTYHDPKSSSLHNNDRLSISS 105

Query: 553 LWGHQYVT 576
             GH  VT
Sbjct: 106 SNGHHQVT 113


>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
           similar to SP|O94761 ATP-dependent DNA helicase Q4
           (RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 911

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 265 LAINTVAAMGFIPHGSIGAKDHLITETLLREVVERMGKDFNDAASSYLE-FPASDRHLAL 441
           + + TVA    +  G +GA  H      + E V+ +G+   D   SY   F  +D +L L
Sbjct: 539 VVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKL 598

Query: 442 MAHASKD 462
            + A  D
Sbjct: 599 RSLAHSD 605


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,918,886
Number of Sequences: 28952
Number of extensions: 329848
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)