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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0557
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    29   0.54 
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.6  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    28   1.6  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    27   2.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.2  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    27   2.9  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   5.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.0  
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.6  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   6.6  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    25   8.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   8.7  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 572  SLQIYQLQRDNPNTENIKTEKILEALRGIKLNSNHSI 682
            ++ +  L  DNPN +NIK   I +A+    +N++ SI
Sbjct: 3036 TISLNALDHDNPNLKNIKGSSIYDAVAQAVVNTHTSI 3072


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
 Frame = +3

Query: 198 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKL-TDDANKAAKLTVTFKFGEISRDGSVQ 365
           EY++EG  +++ N  IID +    E   G  KL      KA + T+T    E   D   Q
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSE-PLDTPEQ 658

Query: 366 V---LATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIK-EHSKEI 533
           V   L     N ++A     +   +SH VF+  L+ +    G+   +  N I    S+ +
Sbjct: 659 VTWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERL 718

Query: 534 DSSKLV 551
            SS+ V
Sbjct: 719 SSSQSV 724


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 560 FFRGSLQIYQLQRDNPNTENIKTEKILEALRGIKLNSNHSIKINIGFWXYWVEPDCKLLS 739
           FF  SL + ++  +NPN E +   K+   +    +   H   +        +EPD K L+
Sbjct: 194 FFLASLGVLRINYENPNFELLPILKLFANIVANSVALTHDYSLQQSHEDPIIEPDNKFLT 253

Query: 740 Q 742
           +
Sbjct: 254 E 254


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 554 YRFFRGSLQIYQLQRDNPNTENIKTEKILEALRGIKL 664
           Y  FRG+       R NPN   +K  K ++  RG KL
Sbjct: 307 YYIFRGANGQKNRFRSNPNDPKLKHLKFIQTKRGTKL 343


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 471  KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 572
            K+EGDAKT  DN +++  K  D  K    D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 25/99 (25%), Positives = 44/99 (44%)
 Frame = -3

Query: 742 LAKEFTVRFYPIXPKTYVNLNTVVTIQFDSPQCFKYLFSLNVFRVRVITLELVNLQASSE 563
           L++     F+PI  K    L ++  +  DS     ++ S  V  +  +T   VN    + 
Sbjct: 148 LSRNLFHEFFPIL-KLCSQLPSLRNLTLDSNLFSNFISSNTVLLIPHLTQLSVNGCGLNS 206

Query: 562 KSVCTSFEESISLECSLMKLSTAVLASPSSFLFLERIQT 446
           K V    E   SLE   ++ +  +L+  +SF  L+ +QT
Sbjct: 207 KDVQWITETFPSLEVLYLEANEIILSKATSFKNLQFLQT 245


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 283 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSL 435
           SS   P  P      ++      ++   S+RL + T+P+L   N   RKSL
Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSL 197


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 394 PSLTTANTMTRKSLIKCSSGSSLETRSLKATLKLLSIISSRNTPKR*TL 540
           P+LTT+NT  + S    SS   +E+ S+  +    + I++ +TP   T+
Sbjct: 296 PNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTI 344


>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 622 NVFRVRVITLELV--NLQASSEKSVCTSFEESISLE 521
           N F   ++++ +V   ++    KS+CT+F  SIS E
Sbjct: 20  NFFLTNILSMSVVFRTVEDPELKSICTTFTSSISAE 55


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +2

Query: 581 IYQLQRDNPNTENIKTEKILEALRGIKLNSNHSIKINI 694
           I+Q+  +  ++ N+K+ ++LE L   + ++ H I + I
Sbjct: 548 IHQIGAEASSSNNVKSTELLEGLANARKSALHEIFVKI 585


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 441 LDETFSCHRICSCKRWRSYYSQSP 370
           L E    H+ C+ K W   YS+ P
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 108 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 266
           N N    +GI  E+SK+ +   KN + SS + K     V+ +    I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,683
Number of Sequences: 5004
Number of extensions: 53879
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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