BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0557 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 29 0.54 SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.6 SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 28 1.6 SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 27 2.2 SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.2 SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 27 2.9 SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 26 5.0 SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.0 SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.6 SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 26 6.6 SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 25 8.7 SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 8.7 >SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 4196 Score = 29.5 bits (63), Expect = 0.54 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +2 Query: 572 SLQIYQLQRDNPNTENIKTEKILEALRGIKLNSNHSI 682 ++ + L DNPN +NIK I +A+ +N++ SI Sbjct: 3036 TISLNALDHDNPNLKNIKGSSIYDAVAQAVVNTHTSI 3072 >SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 817 Score = 27.9 bits (59), Expect = 1.6 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 8/126 (6%) Frame = +3 Query: 198 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKL-TDDANKAAKLTVTFKFGEISRDGSVQ 365 EY++EG +++ N IID + E G KL KA + T+T E D Q Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSE-PLDTPEQ 658 Query: 366 V---LATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIK-EHSKEI 533 V L N ++A + +SH VF+ L+ + G+ + N I S+ + Sbjct: 659 VTWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERL 718 Query: 534 DSSKLV 551 SS+ V Sbjct: 719 SSSQSV 724 >SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Schizosaccharomyces pombe|chr 1|||Manual Length = 380 Score = 27.9 bits (59), Expect = 1.6 Identities = 15/61 (24%), Positives = 27/61 (44%) Frame = +2 Query: 560 FFRGSLQIYQLQRDNPNTENIKTEKILEALRGIKLNSNHSIKINIGFWXYWVEPDCKLLS 739 FF SL + ++ +NPN E + K+ + + H + +EPD K L+ Sbjct: 194 FFLASLGVLRINYENPNFELLPILKLFANIVANSVALTHDYSLQQSHEDPIIEPDNKFLT 253 Query: 740 Q 742 + Sbjct: 254 E 254 >SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces pombe|chr 2|||Manual Length = 424 Score = 27.5 bits (58), Expect = 2.2 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +2 Query: 554 YRFFRGSLQIYQLQRDNPNTENIKTEKILEALRGIKL 664 Y FRG+ R NPN +K K ++ RG KL Sbjct: 307 YYIFRGANGQKNRFRSNPNDPKLKHLKFIQTKRGTKL 343 >SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1461 Score = 27.5 bits (58), Expect = 2.2 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +3 Query: 471 KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 572 K+EGDAKT DN +++ K D K D++EE Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336 >SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|Schizosaccharomyces pombe|chr 1|||Manual Length = 511 Score = 27.1 bits (57), Expect = 2.9 Identities = 25/99 (25%), Positives = 44/99 (44%) Frame = -3 Query: 742 LAKEFTVRFYPIXPKTYVNLNTVVTIQFDSPQCFKYLFSLNVFRVRVITLELVNLQASSE 563 L++ F+PI K L ++ + DS ++ S V + +T VN + Sbjct: 148 LSRNLFHEFFPIL-KLCSQLPSLRNLTLDSNLFSNFISSNTVLLIPHLTQLSVNGCGLNS 206 Query: 562 KSVCTSFEESISLECSLMKLSTAVLASPSSFLFLERIQT 446 K V E SLE ++ + +L+ +SF L+ +QT Sbjct: 207 KDVQWITETFPSLEVLYLEANEIILSKATSFKNLQFLQT 245 >SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccharomyces pombe|chr 1|||Manual Length = 337 Score = 26.2 bits (55), Expect = 5.0 Identities = 15/51 (29%), Positives = 23/51 (45%) Frame = +1 Query: 283 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSL 435 SS P P ++ ++ S+RL + T+P+L N RKSL Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSL 197 >SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 3971 Score = 26.2 bits (55), Expect = 5.0 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = +1 Query: 394 PSLTTANTMTRKSLIKCSSGSSLETRSLKATLKLLSIISSRNTPKR*TL 540 P+LTT+NT + S SS +E+ S+ + + I++ +TP T+ Sbjct: 296 PNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTI 344 >SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 190 Score = 25.8 bits (54), Expect = 6.6 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = -3 Query: 622 NVFRVRVITLELV--NLQASSEKSVCTSFEESISLE 521 N F ++++ +V ++ KS+CT+F SIS E Sbjct: 20 NFFLTNILSMSVVFRTVEDPELKSICTTFTSSISAE 55 >SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Schizosaccharomyces pombe|chr 3|||Manual Length = 785 Score = 25.8 bits (54), Expect = 6.6 Identities = 10/38 (26%), Positives = 23/38 (60%) Frame = +2 Query: 581 IYQLQRDNPNTENIKTEKILEALRGIKLNSNHSIKINI 694 I+Q+ + ++ N+K+ ++LE L + ++ H I + I Sbjct: 548 IHQIGAEASSSNNVKSTELLEGLANARKSALHEIFVKI 585 >SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schizosaccharomyces pombe|chr 1|||Manual Length = 542 Score = 25.4 bits (53), Expect = 8.7 Identities = 9/24 (37%), Positives = 12/24 (50%) Frame = -1 Query: 441 LDETFSCHRICSCKRWRSYYSQSP 370 L E H+ C+ K W YS+ P Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462 >SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizosaccharomyces pombe|chr 1|||Manual Length = 1290 Score = 25.4 bits (53), Expect = 8.7 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = +3 Query: 108 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 266 N N +GI E+SK+ + KN + SS + K V+ + I+G+K + Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,741,683 Number of Sequences: 5004 Number of extensions: 53879 Number of successful extensions: 189 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 189 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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