Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0557
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 29 0.54
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.6
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 28 1.6
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 27 2.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.2
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 27 2.9
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 26 5.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.0
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.6
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 26 6.6
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 25 8.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 8.7
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 29.5 bits (63), Expect = 0.54
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 572 SLQIYQLQRDNPNTENIKTEKILEALRGIKLNSNHSI 682
++ + L DNPN +NIK I +A+ +N++ SI
Sbjct: 3036 TISLNALDHDNPNLKNIKGSSIYDAVAQAVVNTHTSI 3072
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 1.6
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Frame = +3
Query: 198 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKL-TDDANKAAKLTVTFKFGEISRDGSVQ 365
EY++EG +++ N IID + E G KL KA + T+T E D Q
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSE-PLDTPEQ 658
Query: 366 V---LATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIK-EHSKEI 533
V L N ++A + +SH VF+ L+ + G+ + N I S+ +
Sbjct: 659 VTWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERL 718
Query: 534 DSSKLV 551
SS+ V
Sbjct: 719 SSSQSV 724
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +2
Query: 560 FFRGSLQIYQLQRDNPNTENIKTEKILEALRGIKLNSNHSIKINIGFWXYWVEPDCKLLS 739
FF SL + ++ +NPN E + K+ + + H + +EPD K L+
Sbjct: 194 FFLASLGVLRINYENPNFELLPILKLFANIVANSVALTHDYSLQQSHEDPIIEPDNKFLT 253
Query: 740 Q 742
+
Sbjct: 254 E 254
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 554 YRFFRGSLQIYQLQRDNPNTENIKTEKILEALRGIKL 664
Y FRG+ R NPN +K K ++ RG KL
Sbjct: 307 YYIFRGANGQKNRFRSNPNDPKLKHLKFIQTKRGTKL 343
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 471 KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 572
K+EGDAKT DN +++ K D K D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 2.9
Identities = 25/99 (25%), Positives = 44/99 (44%)
Frame = -3
Query: 742 LAKEFTVRFYPIXPKTYVNLNTVVTIQFDSPQCFKYLFSLNVFRVRVITLELVNLQASSE 563
L++ F+PI K L ++ + DS ++ S V + +T VN +
Sbjct: 148 LSRNLFHEFFPIL-KLCSQLPSLRNLTLDSNLFSNFISSNTVLLIPHLTQLSVNGCGLNS 206
Query: 562 KSVCTSFEESISLECSLMKLSTAVLASPSSFLFLERIQT 446
K V E SLE ++ + +L+ +SF L+ +QT
Sbjct: 207 KDVQWITETFPSLEVLYLEANEIILSKATSFKNLQFLQT 245
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 283 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSL 435
SS P P ++ ++ S+RL + T+P+L N RKSL
Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSL 197
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 394 PSLTTANTMTRKSLIKCSSGSSLETRSLKATLKLLSIISSRNTPKR*TL 540
P+LTT+NT + S SS +E+ S+ + + I++ +TP T+
Sbjct: 296 PNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTI 344
>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 190
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 622 NVFRVRVITLELV--NLQASSEKSVCTSFEESISLE 521
N F ++++ +V ++ KS+CT+F SIS E
Sbjct: 20 NFFLTNILSMSVVFRTVEDPELKSICTTFTSSISAE 55
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +2
Query: 581 IYQLQRDNPNTENIKTEKILEALRGIKLNSNHSIKINI 694
I+Q+ + ++ N+K+ ++LE L + ++ H I + I
Sbjct: 548 IHQIGAEASSSNNVKSTELLEGLANARKSALHEIFVKI 585
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 441 LDETFSCHRICSCKRWRSYYSQSP 370
L E H+ C+ K W YS+ P
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 108 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 266
N N +GI E+SK+ + KN + SS + K V+ + I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,683
Number of Sequences: 5004
Number of extensions: 53879
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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