Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0556
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   4.6  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   4.6  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   6.0  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/52 (17%), Positives = 27/52 (51%)
 Frame = +3

Query: 345 ILMTMATTSGLSSYSSCLPVPVRKIQTSKKLVFECLRLYQVYLEIVRLKTWM 500
           +++T A      SY+  +   V   +  ++ +   ++LY +Y +++ + T++
Sbjct: 182 LILTQAIFLMFVSYNIYVCQTVSNFEYFQRKILLMIQLYYLYFDVIVISTFL 233


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/52 (17%), Positives = 27/52 (51%)
 Frame = +3

Query: 345 ILMTMATTSGLSSYSSCLPVPVRKIQTSKKLVFECLRLYQVYLEIVRLKTWM 500
           +++T A      SY+  +   V   +  ++ +   ++LY +Y +++ + T++
Sbjct: 108 LILTQAIFLMFVSYNIYVCQTVSNFEYFQRKILLMIQLYYLYFDVIVISTFL 159


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 333 WLGIILMTMATTSGLSSYSSCL 398
           W  I+++    TS LSS  +C+
Sbjct: 226 WTLILILAKCITSSLSSLYTCI 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,517
Number of Sequences: 336
Number of extensions: 3788
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)