Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0556
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                    116   1e-28
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                29   4.0  
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)                      28   9.3  

>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score =  116 bits (280), Expect(2) = 1e-28
 Identities = 59/145 (40%), Positives = 87/145 (60%)
 Frame = +2

Query: 155 DVRQTAAVLLRRLFSAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSEL 334
           +VRQ AAVLLRR+F+A            Q  +++E LL  +  +    +R+K+CD VSEL
Sbjct: 27  EVRQMAAVLLRRIFTATVDFLKKIDENTQN-LMKESLLKGIHEEQDSNVRKKICDAVSEL 85

Query: 335 ARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMLTSVPGVFGNRQTENLDVIKGM 514
           +++ +DDDG N W E L+F+F C ++    +KE+ + +  S PGVFGN+Q   L+VIK M
Sbjct: 86  SKSFLDDDGYNHWQELLKFLFECCNSPRAELKESALNIFCSFPGVFGNQQDHYLNVIKQM 145

Query: 515 LISALQPNESMALRTQAVKAVGAFI 589
           L   +    S A+R  A +A  AFI
Sbjct: 146 LWQCINDQTSQAVRFVAARASCAFI 170



 Score = 27.9 bits (59), Expect(2) = 1e-28
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 14 QFYQLLNTLLSTDNDIRSQAE 76
          QF  L+  L+S DND R+QAE
Sbjct: 7  QFEALIGQLMSPDNDTRNQAE 27


>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 308 KVCDVVSELARNHIDDDGNN--QWPEFLQFMFTCASAQDPN 424
           ++ D+++++A   +D DGN    +PEFLQ M       DP+
Sbjct: 249 ELMDMMNQIAFLFVDSDGNGAIDFPEFLQLMTKNLQDADPD 289


>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
          Length = 406

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 606 SLSCSSIKAPTALTA*VRKAIDSFG-CKADINMPFITSKFSV*RFPNTPGTDVSIRIPAS 430
           SL  SS   PTAL+     ++ S    KA  N P   S  S+   P+TP  + S   P +
Sbjct: 129 SLKASS-NTPTALSTTSLMSLPSTSNLKASSNTPTALSTTSLMSLPSTPSLEASSNTPTA 187

Query: 429 L 427
           L
Sbjct: 188 L 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,438,802
Number of Sequences: 59808
Number of extensions: 452763
Number of successful extensions: 1219
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)