Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0556
(750 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT003793-1|AAO41476.1| 1000|Drosophila melanogaster GH07384p pro... 221 6e-58
AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA ... 221 6e-58
U57758-1|AAB49932.1| 360|Drosophila melanogaster putative thyro... 30 3.9
AY071174-1|AAL48796.1| 195|Drosophila melanogaster RE22911p pro... 30 3.9
AY069836-1|AAL39981.1| 444|Drosophila melanogaster SD08021p pro... 30 3.9
AF129079-1|AAD28604.1| 444|Drosophila melanogaster COP9 signalo... 30 3.9
AE014297-1902|AAX52952.1| 1357|Drosophila melanogaster CG33555-P... 30 3.9
AE014297-892|AAF54348.1| 195|Drosophila melanogaster CG9740-PA ... 30 3.9
AE014134-1594|AAF52736.1| 444|Drosophila melanogaster CG9556-PB... 30 3.9
AE014134-1593|AAN10685.1| 444|Drosophila melanogaster CG9556-PA... 30 3.9
>BT003793-1|AAO41476.1| 1000|Drosophila melanogaster GH07384p
protein.
Length = 1000
Score = 221 bits (541), Expect = 6e-58
Identities = 105/209 (50%), Positives = 145/209 (69%), Gaps = 2/209 (0%)
Frame = +2
Query: 8 QAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLR 187
QA F QLL +LLSTDND+R QAE+AYNN+ E KV HL+ +IQN +E+ RQ AAVLLR
Sbjct: 5 QAHFQQLLASLLSTDNDVRQQAEEAYNNLSRELKVTHLLGNIQNGQQSEEARQMAAVLLR 64
Query: 188 RLFSAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNN 367
RLF+ Q L +Q+LL +Q +++ LRRK+C+VV+E+ARN ID+D NN
Sbjct: 65 RLFTTEFFDFYKGLPAESQNQLLQQILLAVQQEVTPQLRRKICEVVAEVARNLIDEDCNN 124
Query: 368 QWPEFLQFMFTCASAQDPNIKEAGIRMLTSVPGVFGNRQTENLDVIKGMLISALQPNESM 547
QWP+ LQF+F CA++ P ++E+ +R+ +SVP +FGN++ + +D+IK ML ++
Sbjct: 125 QWPDILQFLFQCANSPTPQLQESALRIFSSVPSIFGNQEAQYIDLIKQMLAKSMDAGSDP 184
Query: 548 ALRTQAVKAVGAFILLHDK--EPIIQKHF 628
+R QAV+AVGAFIL HDK E I KHF
Sbjct: 185 EVRVQAVRAVGAFILYHDKENETAIHKHF 213
Score = 28.7 bits (61), Expect = 8.9
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 639 LLPLMQGIV-LSIXAADDDSALKVLIELAKSHLNFXRP 749
+LP M I +I A DD S LK+LIE+ ++ F RP
Sbjct: 216 MLPRMIHITGETIEAQDDQSLLKLLIEMTENCPKFLRP 253
>AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA
protein.
Length = 1105
Score = 221 bits (541), Expect = 6e-58
Identities = 105/209 (50%), Positives = 145/209 (69%), Gaps = 2/209 (0%)
Frame = +2
Query: 8 QAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLR 187
QA F QLL +LLSTDND+R QAE+AYNN+ E KV HL+ +IQN +E+ RQ AAVLLR
Sbjct: 5 QAHFQQLLASLLSTDNDVRQQAEEAYNNLSRELKVTHLLGNIQNGQQSEEARQMAAVLLR 64
Query: 188 RLFSAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNN 367
RLF+ Q L +Q+LL +Q +++ LRRK+C+VV+E+ARN ID+D NN
Sbjct: 65 RLFTTEFFDFYKGLPAESQNQLLQQILLAVQQEVTPQLRRKICEVVAEVARNLIDEDCNN 124
Query: 368 QWPEFLQFMFTCASAQDPNIKEAGIRMLTSVPGVFGNRQTENLDVIKGMLISALQPNESM 547
QWP+ LQF+F CA++ P ++E+ +R+ +SVP +FGN++ + +D+IK ML ++
Sbjct: 125 QWPDILQFLFQCANSPTPQLQESALRIFSSVPSIFGNQEAQYIDLIKQMLAKSMDAGSDP 184
Query: 548 ALRTQAVKAVGAFILLHDK--EPIIQKHF 628
+R QAV+AVGAFIL HDK E I KHF
Sbjct: 185 EVRVQAVRAVGAFILYHDKENETAIHKHF 213
Score = 28.7 bits (61), Expect = 8.9
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 639 LLPLMQGIV-LSIXAADDDSALKVLIELAKSHLNFXRP 749
+LP M I +I A DD S LK+LIE+ ++ F RP
Sbjct: 216 MLPRMIHITGETIEAQDDQSLLKLLIEMTENCPKFLRP 253
>U57758-1|AAB49932.1| 360|Drosophila melanogaster putative thyroid
receptor interactingprotein protein.
Length = 360
Score = 29.9 bits (64), Expect = 3.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 14 QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 154
++ L N L+ + N SQ Y N P + +LVNS QN DI E
Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326
>AY071174-1|AAL48796.1| 195|Drosophila melanogaster RE22911p
protein.
Length = 195
Score = 29.9 bits (64), Expect = 3.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 106 KSSAPSEFNSKCRHCRRCASN 168
K P ++ + C HCR+C SN
Sbjct: 32 KDGEPKKYRALCTHCRKCQSN 52
>AY069836-1|AAL39981.1| 444|Drosophila melanogaster SD08021p
protein.
Length = 444
Score = 29.9 bits (64), Expect = 3.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 14 QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 154
++ L N L+ + N SQ Y N P + +LVNS QN DI E
Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326
>AF129079-1|AAD28604.1| 444|Drosophila melanogaster COP9
signalosome subunit 2 CSN2 protein.
Length = 444
Score = 29.9 bits (64), Expect = 3.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 14 QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 154
++ L N L+ + N SQ Y N P + +LVNS QN DI E
Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326
>AE014297-1902|AAX52952.1| 1357|Drosophila melanogaster CG33555-PA,
isoform A protein.
Length = 1357
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 79 RIQQHSNRNK-SSAPSEFNSKCRHCRRCASNGGRAVTKII*CRI 207
+++QH+N N +S PS RHC RC + GR + CR+
Sbjct: 10 QLEQHNNHNAHTSDPS------RHCARCTTELGRITNRGAPCRV 47
>AE014297-892|AAF54348.1| 195|Drosophila melanogaster CG9740-PA
protein.
Length = 195
Score = 29.9 bits (64), Expect = 3.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 106 KSSAPSEFNSKCRHCRRCASN 168
K P ++ + C HCR+C SN
Sbjct: 32 KDGEPKKYRALCTHCRKCQSN 52
>AE014134-1594|AAF52736.1| 444|Drosophila melanogaster CG9556-PB,
isoform B protein.
Length = 444
Score = 29.9 bits (64), Expect = 3.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 14 QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 154
++ L N L+ + N SQ Y N P + +LVNS QN DI E
Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326
>AE014134-1593|AAN10685.1| 444|Drosophila melanogaster CG9556-PA,
isoform A protein.
Length = 444
Score = 29.9 bits (64), Expect = 3.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 14 QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 154
++ L N L+ + N SQ Y N P + +LVNS QN DI E
Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,476,666
Number of Sequences: 53049
Number of extensions: 676812
Number of successful extensions: 1667
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1664
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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