BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0556 (750 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 100 2e-21 Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr... 28 6.2 U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 28 6.2 >AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta family protein 3 protein. Length = 1092 Score = 99.5 bits (237), Expect = 2e-21 Identities = 58/198 (29%), Positives = 96/198 (48%) Frame = +2 Query: 14 QFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRL 193 QF +L+ L S DNDIR QAE+ Y I TKV L + + D R T V LRR+ Sbjct: 5 QFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFLRRV 64 Query: 194 FSAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQW 373 + + + ++L + + +++K+ D++SE+A N IDD G+ W Sbjct: 65 LARDWDAIWETLNEENKQRILAKVLEMIVHETELSIKKKIADLISEIASNLIDDSGDMTW 124 Query: 374 PEFLQFMFTCASAQDPNIKEAGIRMLTSVPGVFGNRQTENLDVIKGMLISALQPNESMAL 553 L+ M C ++D + +L P +FGNR L +K +++ + + Sbjct: 125 GGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGNRLAHFLPTLK-VVLEKCMATPDLQI 183 Query: 554 RTQAVKAVGAFILLHDKE 607 + AV+AV AF + +D+E Sbjct: 184 KATAVRAVIAFAVDNDEE 201 >Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein D2045.2 protein. Length = 1792 Score = 28.3 bits (60), Expect = 6.2 Identities = 16/65 (24%), Positives = 28/65 (43%) Frame = +2 Query: 266 LLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIR 445 LL D +R C +S+L R H + + PE+L+ + +++EA R Sbjct: 1123 LLPALTDREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKESVREAADR 1182 Query: 446 MLTSV 460 S+ Sbjct: 1183 AADSI 1187 >U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical protein C05D11.1 protein. Length = 995 Score = 28.3 bits (60), Expect = 6.2 Identities = 15/57 (26%), Positives = 25/57 (43%) Frame = +3 Query: 546 WLCELRQLKP*APLYYYTIRSQSYKSISGDVLLPLMQGIVLSIXAADDDSALKVLIE 716 W C L L+ Y+ ++ + G+V P++ G V + AD D L +E Sbjct: 7 WSCTETVLNGGIKLFLYSSKNTKLRVAIGEVPGPMVHGAVSFVTEADSDDGLPHTLE 63 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,740,678 Number of Sequences: 27780 Number of extensions: 348909 Number of successful extensions: 1009 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 934 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1008 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1777507862 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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