Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0556
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...   100   2e-21
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    28   6.2  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 58/198 (29%), Positives = 96/198 (48%)
 Frame = +2

Query: 14  QFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRL 193
           QF +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V LRR+
Sbjct: 5   QFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFLRRV 64

Query: 194 FSAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQW 373
            +              +  +  ++L  +  +    +++K+ D++SE+A N IDD G+  W
Sbjct: 65  LARDWDAIWETLNEENKQRILAKVLEMIVHETELSIKKKIADLISEIASNLIDDSGDMTW 124

Query: 374 PEFLQFMFTCASAQDPNIKEAGIRMLTSVPGVFGNRQTENLDVIKGMLISALQPNESMAL 553
              L+ M  C  ++D       + +L   P +FGNR    L  +K +++        + +
Sbjct: 125 GGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGNRLAHFLPTLK-VVLEKCMATPDLQI 183

Query: 554 RTQAVKAVGAFILLHDKE 607
           +  AV+AV AF + +D+E
Sbjct: 184 KATAVRAVIAFAVDNDEE 201


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +2

Query: 266  LLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIR 445
            LL    D    +R   C  +S+L R H   + +   PE+L+ +         +++EA  R
Sbjct: 1123 LLPALTDREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKESVREAADR 1182

Query: 446  MLTSV 460
               S+
Sbjct: 1183 AADSI 1187


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 546 WLCELRQLKP*APLYYYTIRSQSYKSISGDVLLPLMQGIVLSIXAADDDSALKVLIE 716
           W C    L     L+ Y+ ++   +   G+V  P++ G V  +  AD D  L   +E
Sbjct: 7   WSCTETVLNGGIKLFLYSSKNTKLRVAIGEVPGPMVHGAVSFVTEADSDDGLPHTLE 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,740,678
Number of Sequences: 27780
Number of extensions: 348909
Number of successful extensions: 1009
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)