Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0556
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    87   1e-17
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    79   4e-15
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    36   0.022
At1g26170.1 68414.m03194 importin beta-2 subunit family protein ...    29   2.5  
At5g57020.1 68418.m07117 myristoyl-CoA:protein N-myristoyltransf...    29   4.4  
At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr...    28   5.8  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 4/197 (2%)
 Frame = +2

Query: 11  AQFYQLLNTLLSTDNDIRSQAEDAYN---NIPTETKVVHLVNSIQNADIAEDVRQTAAVL 181
           A F  L++ L+S+ N+ RS AE  +N       +T  + L + +Q +   E  R  AAVL
Sbjct: 22  APFETLISHLMSSSNEQRSSAESLFNLAKQSNPDTLSLKLAHLLQLSPHPEG-RAMAAVL 80

Query: 182 LRRLFSAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDG 361
           LR+L +              Q+ L+  +L  +Q + ++ + +K+CD VSELA   + ++G
Sbjct: 81  LRKLLTRDDAYLWPRLSLSTQSSLKSSMLYCIQHEEAKSISKKICDTVSELASGILPENG 140

Query: 362 NNQWPEFLQFMFTCASAQDPNIKEAGIRMLTSVPGVFGNRQTENLDVIKGMLISALQPNE 541
              WPE L F+F C ++  P ++E+   +L  +    G   T ++  + G+ +  L  N 
Sbjct: 141 ---WPELLPFVFQCVTSVTPKLQESAFLILAQLSQYVGETLTPHIKELHGVFLQCLSSNS 197

Query: 542 -SMALRTQAVKAVGAFI 589
            S  ++  A+ AV +F+
Sbjct: 198 ASSDVKIAALNAVISFV 214


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 2/200 (1%)
 Frame = +2

Query: 26  LLNTLLSTDNDIRSQAEDAYNNIPTETKVVH-LVNSIQNADIAEDVRQTAAVLLRRLFSA 202
           LL   L  DND R QAED    +  + +VV  LV  ++ A    +VRQ AAVLLR+  + 
Sbjct: 8   LLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKRITG 66

Query: 203 XXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEF 382
                       +Q V ++ L+ ++ ++ S  +RR   +VVS +A+  +      +WP+ 
Sbjct: 67  HWAKLSPQL---KQHV-KQSLIESITVENSPPVRRASANVVSVVAKYAVPA---GEWPDL 119

Query: 383 LQFMFTCASAQDPNIKEAGIRMLTSVPGVFGNRQTENLDVIKGMLISALQPNESMALRTQ 562
           L F+F C+ +   + +E  + + +S+    GN        ++ +L+  +Q   S  +R  
Sbjct: 120 LTFLFQCSQSAQEDHREVALILFSSLTETIGNTFRPYFADLQALLLKCMQDESSSRVRVA 179

Query: 563 AVKAVGAFI-LLHDKEPIIQ 619
           A+KAVG+F+   +D + +++
Sbjct: 180 ALKAVGSFLEFTNDGDEVVK 199


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +2

Query: 29  LNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAA 175
           +N   S  ND+  Q   A+ N+PTET + H    + NA IA DV +  A
Sbjct: 459 INDTSSICNDVDDQPLAAWINLPTETSIDHSPIVVNNAAIATDVEERQA 507


>At1g26170.1 68414.m03194 importin beta-2 subunit family protein
           similar to Importin9 isoform 1 [Mus musculus]
           GI:15186756; contains Pfam profile PF03810:
           Importin-beta N-terminal domain
          Length = 931

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 5/165 (3%)
 Frame = +2

Query: 29  LNTLLSTDNDIRSQAEDAYNNIPTETKVVH-LVNSIQNADIAEDVRQ---TAAVLLRRLF 196
           L+  L  + ++RS AE + N    +      L     N D++  +RQ   ++AVLL++  
Sbjct: 14  LSASLDPNQNVRSFAETSLNQASLQPGFGSALCRVAANKDLSLGLRQISFSSAVLLKQFI 73

Query: 197 SAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWP 376
                           +   + L+    +       RK+C  +S    +    D   +WP
Sbjct: 74  KKHWRENEEAFEYPLVSSEEKALIRGQLLGSLDDSHRKICTAISMDISSIATYDWPEEWP 133

Query: 377 EFLQFMFTCAS-AQDPNIKEAGIRMLTSVPGVFGNRQTENLDVIK 508
           E + F+    S   + N     +R L  + G   +++   L   K
Sbjct: 134 ELVPFLLKLISDPSNTNGVHGALRCLALLSGELDDKEVPTLSYDK 178


>At5g57020.1 68418.m07117 myristoyl-CoA:protein
           N-myristoyltransferase 1 (NMT1) identical to
           N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana]
           GI:7339834
          Length = 434

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 17  FYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVN 127
           FY L +T+L   N    +A  +Y N+ T+T  + L+N
Sbjct: 337 FYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMN 373


>At5g16000.1 68418.m01871 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 638

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -3

Query: 499 IQVFSLTISKYTWYRRKHSNTSFFDV 422
           + +  + +  + W+R++H+  +FFDV
Sbjct: 258 VSLIFIAVGLFLWWRQRHNQNTFFDV 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,593,803
Number of Sequences: 28952
Number of extensions: 317779
Number of successful extensions: 830
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)