Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0555
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 138 9e-34
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 83 4e-17
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 57 2e-09
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 44 2e-05
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 41 1e-04
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 38 0.001
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 37 0.003
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 36 0.006
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 29 0.48
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 28 1.1
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch... 27 3.4
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 138 bits (333), Expect = 9e-34
Identities = 72/178 (40%), Positives = 110/178 (61%)
Frame = +1
Query: 28 KPVAKTYRDRIMTVAIDADEYEHQRILEFFGMKKDEVPSARLIALEQDMAKYKPSSNELS 207
+P+AK Y+D + +DA Y + + ++ D A +IA + M KY + EL+
Sbjct: 270 QPLAKKYQDTLRFAFLDAVRYG--AVAKQMNVESDW--PAFVIANLKSMLKYPFPTTELT 325
Query: 208 PNAIEEFVQSFFDGTLKQHLLSEDLPADWAAKPVKVLVAANFDEVVFDTTKKVLVEFYAP 387
A+ +FV F DG L+ + S+ +P + + + VLVA NFD++V D TK VLVEFYAP
Sbjct: 326 AKAMTKFVGDFVDGKLQPKIKSQPIPE--SQEDLVVLVADNFDDIVMDETKDVLVEFYAP 383
Query: 388 WCGHCKQLVPIYDKLGEHFENDDDVIIAKIDATANELEHTKITXFPTIKLYSKDNQVH 561
WCGHCK L P Y+KL E + +D +V++AKIDAT N++ I+ FPTI + +++V+
Sbjct: 384 WCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMFFKANDKVN 440
Score = 61.3 bits (142), Expect = 1e-10
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +1
Query: 358 KKVLVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIAKIDAT--ANELEHTKITXFPTI 531
K ++V+FYAPWCGHCK L P Y+ + E D + + ++D T + I +PT+
Sbjct: 40 KVLMVKFYAPWCGHCKALAPEYESAADELEK-DGISLVEVDCTEEGDLCSEYSIRGYPTL 98
Query: 532 KLYSKDNQVHDYNG 573
++ Q+ Y+G
Sbjct: 99 NVFKNGKQISQYSG 112
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 83.0 bits (196), Expect = 4e-17
Identities = 40/82 (48%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
Frame = +1
Query: 316 LVAANFDEVVFDTTKKVLVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIAKI--DATA 489
L + NFD+VV D K VLVEFYA WCG+CK+L P Y+ LG+ F+N+ +V I KI D A
Sbjct: 145 LDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFA 204
Query: 490 NELEHTKITXFPTIKLYSKDNQ 555
+ ++ FPTIK + KD++
Sbjct: 205 DIGRLHEVASFPTIKFFPKDDK 226
Score = 73.3 bits (172), Expect = 3e-14
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Frame = +1
Query: 292 WAAKPVKVLVAANFDEVVFDTTKKVLVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIA 471
+A+ V++ + + + K L+EFYA WCGHCK L P+Y++LG FE+ +DV+I
Sbjct: 18 FASGVVELQSLNELENTIRASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIG 77
Query: 472 KIDATANE--LEHTKITXFPTIKLYSKD-NQVHDYNGGED 582
KIDA + + IT FPT+ + D ++ Y+ D
Sbjct: 78 KIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNARD 117
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 57.2 bits (132), Expect = 2e-09
Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Frame = +1
Query: 367 LVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIAKIDATANE--LEHTKITXFPTIKLY 540
LV FYAPWCG+CK+LVP Y KL + + V DA N ++ FPTIKL
Sbjct: 52 LVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLV 111
Query: 541 ---SKDNQVH--DYNG 573
SK + + DYNG
Sbjct: 112 YPSSKGSSLSSTDYNG 127
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +1
Query: 358 KKVLVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIAKIDATANELEHTKITXFPTIKL 537
K +V+FYA WCG CK L P +KL E I D ++ + + PT+ L
Sbjct: 36 KVTVVDFYADWCGPCKYLKPFLEKLSEQ-NQKASFIAVNADKFSDIAQKNGVYALPTMVL 94
Query: 538 YSKDNQVHDYNGGE 579
+ K ++ G +
Sbjct: 95 FRKGQELDRIVGAD 108
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +1
Query: 358 KKVLVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIAKIDATANELEHTKITXFPTIKL 537
K V+V+F+A WCG CK + P +++ + +D I +D + + P+ L
Sbjct: 19 KLVVVDFFATWCGPCKAIAPKFEQFSNTY-SDATFIKVDVDQLSEIAAEAGVHAMPSFFL 77
Query: 538 YSKDNQVHDYNG 573
Y ++ + G
Sbjct: 78 YKNGEKIEEIVG 89
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 307 VKVLVAANFDEVVFDTTKKV-LVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIAKIDA 483
V++ F E++ + +++ L+ FYAPW CKQ+ ++D+ + +N + KI+A
Sbjct: 3 VEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKN---AVFLKIEA 59
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = +1
Query: 370 VEFYAPWCGHCKQLVPIYDKLGEHFENDDDVII-AKIDATANELEHTKITXFPTIKLYSK 546
V+ YA WCG CK + P++ +L + + V +D + PT +
Sbjct: 24 VDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFEN 83
Query: 547 DNQVHDYNGGEDTGRPHQVSL 609
Q+ G +V+L
Sbjct: 84 GKQIDMLTGANPQALKEKVAL 104
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Frame = +1
Query: 370 VEFYAPWCGHCKQLVPIYDKLGEHFEND---DDVIIAKIDATANELEHTKITXFPTIKLY 540
+++Y P CG CK+L P++D + E + + ++D + I PT+ LY
Sbjct: 47 IKYYLPSCGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLY 106
Query: 541 SKDNQVHDYNGGEDTGRPHQVSLRPTXXAP 630
V + G T + T P
Sbjct: 107 QNGEIVEEVPFGASTSEASLLDFVETHLNP 136
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 111 LQDPLVFIFVGIDGDGHDP-VAVGLRDRLQI 22
L+ P+ F FVG+DG GH P A RDR I
Sbjct: 762 LEAPIYFDFVGVDGVGHYPSKASEGRDRASI 792
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Frame = -2
Query: 426 VVDRDQLFAVAAPRSVEFDEDLLSCVEDDFVKVGGDEHFDGFGGPVRGQVLAQQMLLQGA 247
V D D F + + +E LL D + +E + +G + + ++ ++
Sbjct: 717 VKDEDLEFYKKWEKLLNQEERLLLLKRGDVLTFDTEE-LEAYGKTLYPLYITKEDIVCLE 775
Query: 246 VEERLYEFL------NSVRRQLITAGLVFGHVLFKGDQTGRWHLILLHAEELQDPLV 94
+++R++ + N R + +G G +F D+ G W L H +QD +
Sbjct: 776 IDDRVFHYKFAFLNDNGYPRNFLHSGFSVGERVFISDEHGHWSLAKGHIVHIQDSCI 832
>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 303
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 451 DDDVIIAKIDATANELEHTKITXFPTIKLYSKDNQVHDY-NGGEDTGRPHQVSL 609
D VI+ K+ T L ++ F K K +H Y NG D G PH SL
Sbjct: 150 DLSVILVKV-YTLTSLNEVQVREFELNKDGVKKKILHFYYNGWPDFGAPHTFSL 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,817
Number of Sequences: 5004
Number of extensions: 42353
Number of successful extensions: 159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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