Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0555
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 118 GMKKDEVPSARLIALEQDMAKYKPSSNELSPNAIEEFVQS 237
           GMK++ V   R    E+D ++ + +S+  S   IE  +++
Sbjct: 174 GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEA 213


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 142 MAPHPSSCRRTPRSF 98
           + P P SC  TP SF
Sbjct: 653 LLPRPISCHTTPDSF 667


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 118 GMKKDEVPSARLIALEQDMAKYKPSSNELSPNAIEEFVQS 237
           GMK++ V   R    E+D ++ + +S+  S   IE  +++
Sbjct: 174 GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEA 213


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 433 GEHFENDDDVIIAKIDATANELEHTKITXFPTIKLYSKDNQVHDYNG 573
           G++F NDDD+    I   AN  ++ K      + L  +  +V D NG
Sbjct: 293 GKNFNNDDDIKSYLIQFFAN--KNQKFYERGIMMLPERWQKVIDQNG 337


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 111 LQDPLVFIFVGIDGDG 64
           LQ+P  +I+  + GDG
Sbjct: 168 LQEPSFYIYPSLQGDG 183


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 111 LQDPLVFIFVGIDGDG 64
           LQ+P  +I+  + GDG
Sbjct: 168 LQEPSFYIYPSLQGDG 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,285
Number of Sequences: 438
Number of extensions: 3031
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)