Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0554
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5V8 Cluster: Stathmin; n=3; Endopterygota|Rep: Stath...    81   2e-14
UniRef50_Q8IPK0 Cluster: CG31641-PB, isoform B; n=10; Diptera|Re...    69   1e-10
UniRef50_UPI0000D5639F Cluster: PREDICTED: similar to CG31641-PC...    43   0.006

>UniRef50_Q2F5V8 Cluster: Stathmin; n=3; Endopterygota|Rep: Stathmin
           - Bombyx mori (Silk moth)
          Length = 291

 Score = 81.4 bits (192), Expect = 2e-14
 Identities = 40/47 (85%), Positives = 40/47 (85%)
 Frame = +2

Query: 305 GGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKXXXXXXXSL 445
           GGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLK       SL
Sbjct: 18  GGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEERRRSL 64


>UniRef50_Q8IPK0 Cluster: CG31641-PB, isoform B; n=10; Diptera|Rep:
           CG31641-PB, isoform B - Drosophila melanogaster (Fruit
           fly)
          Length = 302

 Score = 68.5 bits (160), Expect = 1e-10
 Identities = 50/121 (41%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
 Frame = +2

Query: 89  LVRDSVMQCFCHSCRAP-VLPAGWEILDHEDTFXXXXXXXXXXXRTNTPVVILRLXXXXX 265
           LVRDSVMQCFCH+CRAP +LPA         +            R+  P    RL     
Sbjct: 5   LVRDSVMQCFCHTCRAPGILPAV--------SRRSAPIKKNNKIRSKQP----RLSKKVK 52

Query: 266 XXXXXXXXXXXXXGGLAYEVILAEPV-GVPVPRRADSPEKTPSVEEIQEKLKXXXXXXXS 442
                        GGL+YEVILAEP   V VP+R  +P K  SVEEI++KLK       S
Sbjct: 53  FITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIEQKLKAAEERRIS 112

Query: 443 L 445
           L
Sbjct: 113 L 113


>UniRef50_UPI0000D5639F Cluster: PREDICTED: similar to CG31641-PC,
           isoform C; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG31641-PC, isoform C - Tribolium castaneum
          Length = 352

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
 Frame = +2

Query: 305 GGLAYEVILAEP-VGVPVPRRADSPEKTPSVEEIQEKLK 418
           GGL YEVIL+EP V    P++A SP+ + SV++I++KLK
Sbjct: 24  GGLRYEVILSEPEVKATPPKKAVSPKNSMSVQDIEDKLK 62


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,556,282
Number of Sequences: 1657284
Number of extensions: 10235483
Number of successful extensions: 27544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27515
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)