Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0554
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.8  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   4.2  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   4.2  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   4.2  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   4.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   5.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.3  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   9.7  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 280 FRWLRFFKWFQAQN 239
           F+WL F  WF+  N
Sbjct: 585 FKWLSFLSWFRYGN 598


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 280 FRWLRFFKWFQAQN 239
           F+WL F  WF+  N
Sbjct: 585 FKWLSFLSWFRYGN 598


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 507 QARPPLSWPSSEQWRPSY*LP 445
           QA PP+++P S+   P Y  P
Sbjct: 40  QALPPITYPPSDWNCPQYNAP 60


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 507 QARPPLSWPSSEQWRPSY*LP 445
           QA PP+++P S+   P Y  P
Sbjct: 31  QALPPITYPPSDWNCPQYNAP 51


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 162 SLIMKIHSPYHHRRLHPAA 218
           S++ K H  +HH++L  +A
Sbjct: 9   SMLPKYHQQFHHQQLFQSA 27


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 162 SLIMKIHSPYHHRRLHPAA 218
           S++ K H  +HH++L  +A
Sbjct: 9   SMLPKYHQQFHHQQLFQSA 27


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 378 SGESARRGTGTPTGSASITSYARPP 304
           S  +A R   TPTG  + ++ A PP
Sbjct: 210 SPAAAPRSVATPTGIPTPSTSASPP 234



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 329 LAEPVGVPVPRRADSP 376
           +A P G+P P  + SP
Sbjct: 218 VATPTGIPTPSTSASP 233


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 269 KIFQMVSSAKSRPGCLSCCWMETT 198
           KI++++       G L  CW E T
Sbjct: 215 KIYKVLEEKYKTSGSLYTCWSEFT 238


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 155 NLLVKRVHGMSGRSTASPSPLRVPXQHGDDQMDYXN 48
           N++    HG     TA  SPL      G+ Q D  N
Sbjct: 197 NVMTYDFHGSWAGVTAQNSPLYASPLDGEWQRDNLN 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,390
Number of Sequences: 336
Number of extensions: 2419
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)