Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0554
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    28   1.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   2.0  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   6.0  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   6.0  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   7.9  

>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 210 PAAGQTPRS*FCA*NHLKNLNHRNP 284
           PAA  TP     +   LKNL HRNP
Sbjct: 242 PAASATPEKSSTSTTSLKNLRHRNP 266


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 197  VMIWRMYLHDQGFPNLLVKRVHGMSGRSTASPS 99
            V+ WR  LH  G P L     +G +  ++ +PS
Sbjct: 1137 VLTWRFQLHSSGAPGLGANSTNGSNFPASTTPS 1169


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 310 TALRHLLGSGFRWLRFFKWFQAQNHDRGVCPAA 212
           ++L +  GSGF +   F++F   N D+G+  AA
Sbjct: 86  SSLLYNAGSGFDYQPSFEYFNLGNDDQGMWAAA 118


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 359 RRADSPEKTPSVEEIQEKLKXXXXXXXSLG 448
           RRAD PE+TPS    ++ L+       ++G
Sbjct: 21  RRADRPEETPSSSVYEQNLRFGDFLMPTVG 50


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 168 SRISQPAGKTGARHEWQKHCITESLT 91
           +++ +PAG++  R+ W++   TE LT
Sbjct: 18  AQLLRPAGRSTLRNVWRRSIATEHLT 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,127
Number of Sequences: 5004
Number of extensions: 40671
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)