BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0554 (700 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_01_0179 + 2021977-2024890,2025117-2025610 28 6.2 02_05_0511 + 29644266-29644399,29644502-29644913,29645007-296450... 28 6.2 10_08_0201 + 15746790-15746889,15748726-15748863,15750715-157507... 28 8.2 06_03_1143 + 27971561-27972670,27973868-27974458 28 8.2 >04_01_0179 + 2021977-2024890,2025117-2025610 Length = 1135 Score = 28.3 bits (60), Expect = 6.2 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -3 Query: 224 LSCCWMETTVMIWRMYLHDQGFPNLLVKRVHGMSG 120 L CCW +TT ++ Y+ + +L +R HG G Sbjct: 854 LGCCWNKTTRLLMYDYMANGSLGAVLHERRHGGHG 888 >02_05_0511 + 29644266-29644399,29644502-29644913,29645007-29645075, 29645169-29645333,29645771-29645870,29645906-29646081 Length = 351 Score = 28.3 bits (60), Expect = 6.2 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -3 Query: 188 WRMYLHDQGFPNLLVKRVHGMSGRSTA 108 WR + D GFPNL + H + G+ A Sbjct: 44 WRSF--DDGFPNLFINNAHDIRGQHVA 68 >10_08_0201 + 15746790-15746889,15748726-15748863,15750715-15750792, 15751251-15752632 Length = 565 Score = 27.9 bits (59), Expect = 8.2 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -3 Query: 467 GGHLTSFPSYVSSLQLPSASLGSLRRK 387 GGH+TS+ +++S L A + LR K Sbjct: 438 GGHVTSYCNFISQLACTGADVSLLREK 464 >06_03_1143 + 27971561-27972670,27973868-27974458 Length = 566 Score = 27.9 bits (59), Expect = 8.2 Identities = 8/18 (44%), Positives = 10/18 (55%) Frame = -2 Query: 513 SWQARPPLSWPSSEQWRP 460 +W P +WP E WRP Sbjct: 444 AWVTENPATWPDPEAWRP 461 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,114,586 Number of Sequences: 37544 Number of extensions: 300701 Number of successful extensions: 837 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 809 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 836 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1792053856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -