Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0554
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0179 + 2021977-2024890,2025117-2025610                           28   6.2  
02_05_0511 + 29644266-29644399,29644502-29644913,29645007-296450...    28   6.2  
10_08_0201 + 15746790-15746889,15748726-15748863,15750715-157507...    28   8.2  
06_03_1143 + 27971561-27972670,27973868-27974458                       28   8.2  

>04_01_0179 + 2021977-2024890,2025117-2025610
          Length = 1135

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 224 LSCCWMETTVMIWRMYLHDQGFPNLLVKRVHGMSG 120
           L CCW +TT ++   Y+ +     +L +R HG  G
Sbjct: 854 LGCCWNKTTRLLMYDYMANGSLGAVLHERRHGGHG 888


>02_05_0511 +
           29644266-29644399,29644502-29644913,29645007-29645075,
           29645169-29645333,29645771-29645870,29645906-29646081
          Length = 351

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 188 WRMYLHDQGFPNLLVKRVHGMSGRSTA 108
           WR +  D GFPNL +   H + G+  A
Sbjct: 44  WRSF--DDGFPNLFINNAHDIRGQHVA 68


>10_08_0201 +
           15746790-15746889,15748726-15748863,15750715-15750792,
           15751251-15752632
          Length = 565

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 467 GGHLTSFPSYVSSLQLPSASLGSLRRK 387
           GGH+TS+ +++S L    A +  LR K
Sbjct: 438 GGHVTSYCNFISQLACTGADVSLLREK 464


>06_03_1143 + 27971561-27972670,27973868-27974458
          Length = 566

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 513 SWQARPPLSWPSSEQWRP 460
           +W    P +WP  E WRP
Sbjct: 444 AWVTENPATWPDPEAWRP 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,114,586
Number of Sequences: 37544
Number of extensions: 300701
Number of successful extensions: 837
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)