Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0554
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)             29   2.7  
SB_51001| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_31805| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_4717| Best HMM Match : Exo_endo_phos (HMM E-Value=0.49)             29   2.7  
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_14492| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)
          Length = 472

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 215 CWMETTVMIWRMYLHDQGFPN 153
           CW    ++IW  +  D GFPN
Sbjct: 355 CWWPCFIIIWPCFSQDHGFPN 375


>SB_51001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 215 CWMETTVMIWRMYLHDQGFPN 153
           CW    ++IW  +  D GFPN
Sbjct: 191 CWWPCFIIIWPCFSQDHGFPN 211


>SB_31805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 313 QTALRHLLGSGFRWL--RFFKWFQAQNHD 233
           +T+L +  G GF+WL  RF KW  A+ +D
Sbjct: 165 RTSLTNGCGQGFKWLLTRFKKWLAAREND 193


>SB_4717| Best HMM Match : Exo_endo_phos (HMM E-Value=0.49)
          Length = 439

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 215 CWMETTVMIWRMYLHDQGFPN 153
           CW    ++IW  +  D GFPN
Sbjct: 16  CWWPCFIIIWPCFSQDHGFPN 36


>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 540 HSSVSNKVRSWQARPPLSWPSSEQWRPSY 454
           H S   +   +   PP ++PSS+QW P+Y
Sbjct: 494 HDSTQYQSAQFAQIPPGAYPSSDQWIPAY 522


>SB_14492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 162 ISQPAGKTGARHEWQKHCITESLTSXYXAW 73
           +S+ A K    HEW +HC+  S++     W
Sbjct: 39  VSEKASKEDLHHEWDEHCLA-SISKSTAEW 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,968,099
Number of Sequences: 59808
Number of extensions: 330171
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)