Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0552
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   3.8  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    26   5.0  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   8.7  

>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 194 GRLCFLCWIMSEGIFVCVFKENSRRTV 274
           GR C +C + S+G+    FKE S  T+
Sbjct: 214 GRRCDMCTLSSKGLCPSAFKEKSGITI 240


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 518 HSFLVPYVNTGPMYWFAIGFPSSG 447
           H+ L+PY   G ++ FA   P+SG
Sbjct: 305 HAELIPYFRDGGVHGFARSMPTSG 328


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 313  LFLVFHRFAIKDVYRT--PGIFLEYTYKYAF 227
            LFL  H +A++D+Y T   GI    T+ Y F
Sbjct: 1433 LFLHLHSWALEDLYETDPSGIVSRQTFFYNF 1463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,241
Number of Sequences: 5004
Number of extensions: 70170
Number of successful extensions: 178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)