Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0552
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 31 0.74
07_03_0476 - 18547223-18548187,18548743-18549958 31 1.3
09_04_0289 + 16424385-16424447,16424678-16424766,16424925-164250... 29 3.0
06_02_0333 + 14567509-14568081,14568109-14568438,14568642-145695... 29 5.2
04_01_0559 - 7175828-7176195,7176262-7176973,7178028-7178201,717... 29 5.2
02_02_0457 + 10503801-10507358 29 5.2
08_02_0348 - 16075103-16075492,16076170-16076469 28 9.1
07_03_0059 + 12901191-12901316,12901333-12901452,12901891-129021... 28 9.1
06_02_0335 - 14591512-14591772,14594021-14594215,14594379-145946... 28 9.1
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 28 9.1
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 28 9.1
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 28 9.1
02_03_0034 - 14142518-14142923,14142935-14143269,14143976-141440... 28 9.1
01_05_0261 - 20135258-20135725 28 9.1
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 31.5 bits (68), Expect = 0.74
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 115 PNSMRRVKVWLGL*LGSVCAFRSAGTWIR 29
P RR+K+W L S C+ RSA W R
Sbjct: 275 PGCFRRIKIWSSLSSSSSCSRRSAARWRR 303
>07_03_0476 - 18547223-18548187,18548743-18549958
Length = 726
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 377 AATGTSLVSRTPRNTTLNGCKLRILMKETQLQTSTLARYSRTVPERNGNLA 529
A+TG S R T GC+ R+++K T +T +A++ VPE N LA
Sbjct: 326 ASTGPSGTPRPGPPPTRTGCQARMVIKITPCRTYRVAKF---VPEHNHPLA 373
>09_04_0289 +
16424385-16424447,16424678-16424766,16424925-16425068,
16425713-16426189,16426320-16426527
Length = 326
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 474 PVHWPGIHVRYQKGMGIWPSARHQLSSVEEAK*KNLPPEDFSW 602
P+ W + R++K M + H L+S EE + + + E W
Sbjct: 90 PISWSKVETRFEKDMLAFTGCSHSLTSEEEEELRKMRYEVSHW 132
>06_02_0333 +
14567509-14568081,14568109-14568438,14568642-14569550,
14569598-14569777,14570416-14570698,14571339-14571832
Length = 922
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -3
Query: 208 ETQPPRPNGLPPS-SKIGSYSAQW 140
E QPPR +G+PPS S+ S S++W
Sbjct: 829 ENQPPRSSGVPPSPSEWCSSSSRW 852
>04_01_0559 -
7175828-7176195,7176262-7176973,7178028-7178201,
7178814-7178891
Length = 443
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -3
Query: 208 ETQPPRPNGLPPS-SKIGSYSAQW 140
+ QPPR +G+PPS S+ S S++W
Sbjct: 370 DNQPPRSSGVPPSPSECRSSSSRW 393
>02_02_0457 + 10503801-10507358
Length = 1185
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 43 LQSEKRTQIPAITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVWEAVFPML 216
L + IP + + KL++ +WNL E T+L +L+ T VW + FP L
Sbjct: 921 LNDPQSLSIPTLKKLKLIN-SWNLLGDIECCSLTSLVFSLWHVTSIPLHVWSSSFPAL 977
>08_02_0348 - 16075103-16075492,16076170-16076469
Length = 229
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -3
Query: 208 ETQPPRPNGLPPS-SKIGSYSAQW 140
+ QPPR +G+PPS S+ S S++W
Sbjct: 178 DNQPPRSSGVPPSPSEWRSSSSRW 201
>07_03_0059 +
12901191-12901316,12901333-12901452,12901891-12902170,
12902348-12902895,12902943-12903122,12904331-12904846
Length = 589
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -3
Query: 208 ETQPPRPNGLPPS-SKIGSYSAQW 140
+ QPPR +G PPS S+ S S++W
Sbjct: 496 DNQPPRSSGAPPSPSECRSSSSRW 519
>06_02_0335 -
14591512-14591772,14594021-14594215,14594379-14594679,
14594930-14595051,14595287-14595466,14595514-14596337,
14596377-14596435,14596480-14597075
Length = 845
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -3
Query: 208 ETQPPRPNGLPPS-SKIGSYSAQW 140
+ QP RP+G+PPS S+ S S++W
Sbjct: 761 DNQPSRPSGVPPSPSEWRSSSSRW 784
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2
Query: 92 SLARVIAGICVRFSLCRNLDKRYQVSLVV 6
S+A VI G+C+R L R+L RY+V + V
Sbjct: 729 SMATVI-GLCLRVKLMRSLPPRYKVDIRV 756
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2
Query: 92 SLARVIAGICVRFSLCRNLDKRYQVSLVV 6
S+A VI G+C+R L R+L RY+V + V
Sbjct: 729 SMATVI-GLCLRVKLMRSLPPRYKVDIRV 756
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -3
Query: 208 ETQPPRPNGLPPS-SKIGSYSAQW 140
+ QPPR +G+PPS S+ S S++W
Sbjct: 439 DNQPPRSSGVPPSPSEWRSSSSRW 462
>02_03_0034 -
14142518-14142923,14142935-14143269,14143976-14144068,
14144704-14145674,14145714-14145812,14146011-14146488,
14146717-14146929
Length = 864
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -3
Query: 208 ETQPPRPNGLPPS-SKIGSYSAQW 140
+ QPPR +G+PPS S+ S S++W
Sbjct: 771 DNQPPRSSGVPPSPSEWRSSSSRW 794
>01_05_0261 - 20135258-20135725
Length = 155
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -3
Query: 208 ETQPPRPNGLPPS-SKIGSYSAQW 140
+ QPPR +G+PPS S+ S S++W
Sbjct: 62 DNQPPRSSGVPPSPSEWRSSSSRW 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,456,296
Number of Sequences: 37544
Number of extensions: 502735
Number of successful extensions: 1327
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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