Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0552
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 54 2e-07
SB_39465| Best HMM Match : PDH (HMM E-Value=1.5) 44 1e-04
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 35 0.061
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 34 0.11
SB_57337| Best HMM Match : Sigma70_r2 (HMM E-Value=8.6) 33 0.25
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_6723| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_32769| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_28101| Best HMM Match : DiS_P_DiS (HMM E-Value=6.6) 31 1.3
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_3931| Best HMM Match : GA (HMM E-Value=3.9) 28 7.0
>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 1240
Score = 53.6 bits (123), Expect = 2e-07
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 1/145 (0%)
Frame = +1
Query: 16 DTWYLLSKFLQSEKRTQIPAITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVW 195
+ W L + L ++ ++ A RA LL DA+NLA AGEL TAL++T +L EE ++ W
Sbjct: 872 ENWERLKQQLDTDHE-KLSAADRAGLLDDAFNLARAGELPLTTALDLTKYLTKEEMYVPW 930
Query: 196 EAVFPMLDHVGRHICMCIQGKFQAYGRHLLLQIYXXXXXXXXXXXXXXXTN-LRCTVKSF 372
A + + +C + Y ++ L Q+ LR V
Sbjct: 931 AAALSNMGFLESRLCE-NEEHMTLYKKYALQQLIPIVRKLGWDDKGSHLQKYLRSYVLKL 989
Query: 373 LCSNGYKPCVKDAQEHYAKWMQAKN 447
G C + +A WM+ ++
Sbjct: 990 CARYGDVECATAVKSRFADWMRGES 1014
>SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)
Length = 369
Score = 44.0 bits (99), Expect = 1e-04
Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 1/199 (0%)
Frame = +1
Query: 16 DTWYLLSKFLQSEKRTQIPAITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVW 195
+ W L K L S+ + R+ L+ D++ LA +G L TAL++T +L E D++ W
Sbjct: 67 ENWKQLIKQLNSDHKV-FHQTDRSGLIDDSFALARSGLLKLTTALDLTSYLHNERDYIPW 125
Query: 196 EAVFPMLDHVGRHICMCIQGKFQAYGRHLLLQIYXXXXXXXXXXXXXXXTNLRCTVKSFL 375
+ L +G + + + Y ++++ ++ ++ TV L
Sbjct: 126 SSALGNLGFIGS--MLSLTPAYGDYNKYIVEKVKPIEKYLGWEDKGTILDSM--TVSPHL 181
Query: 376 CSNGYKPCVKDAQEHYAKWMQAKNPDEGNPIANQYIGPVFTYGTRKEWEFGLQRVINFPP 555
Y VK E ++ + + +P I T GTR W G
Sbjct: 182 RGMVYHTAVKYGGEKEWDFLWGRYQNSIDPTEKSRIMYALT-GTRDVWLLGRLLDYTLDE 240
Query: 556 SR-KQSERTYLLKTLAGXP 609
S+ + + T +L ++G P
Sbjct: 241 SKIRTQDMTSVLAQVSGHP 259
>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 791
Score = 35.1 bits (77), Expect = 0.061
Identities = 15/50 (30%), Positives = 31/50 (62%)
Frame = +1
Query: 76 ITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVWEAVFPMLDHV 225
+ R L+ D++NLA A L+ A+++T++L E ++L W+ L+++
Sbjct: 527 LDRYGLIDDSFNLARANMLNITKAMDITVYLTKETEYLPWKGAEMNLNYI 576
>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 890
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 82 RAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVWEAV 204
RA LL +A+ LA +L++ A +T FL+ E+ ++ W V
Sbjct: 662 RAGLLFNAFKLAMGSQLNYTKAFAITEFLRKEDSYMCWGVV 702
>SB_57337| Best HMM Match : Sigma70_r2 (HMM E-Value=8.6)
Length = 220
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +1
Query: 349 LRCTVKSFLCSNGYKPCVKDAQEHYAKWMQAKNPDEGNPIANQYIGPVFTYGTR----KE 516
LR + CS G CV +A + WM NPI + V++YG KE
Sbjct: 3 LREVIVGLACSCGEVTCVNNATAMFQAWMANST---ANPIPPNFRHLVYSYGVAYGGVKE 59
Query: 517 WEFGLQR 537
W+F ++
Sbjct: 60 WDFAFKQ 66
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 32.3 bits (70), Expect = 0.43
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 401 SRTPRNTTLNGCKLRILMKETQLQTSTLARYSRTVPERNGNLAF 532
SR R +GC LR L+ QL LA +++T+P++ + F
Sbjct: 2128 SRQQRFERSSGCILRSLVNNFQLLNRFLASFNQTIPDQTNGITF 2171
>SB_6723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 43 LQSEKRTQIPAITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVWE 198
++ R +I I H WN A+ ++ + L + L + E HLVW+
Sbjct: 177 IRGTSRLEIQLIYERSEAHLVWNTAHLRKIRATSRLEIQLIYERSEAHLVWK 228
>SB_32769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 31.1 bits (67), Expect = 1.00
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -2
Query: 578 VLSLCFLDGGKLMTR*RPNSHSFLVPYVNTGPMYWFAIGFPSS 450
+LSLCF+ + + +P ++ ++ Y G M FA GFPS+
Sbjct: 39 LLSLCFISIDRCVAISKPFRYNTIMTYWKLGLMLLFAWGFPSA 81
>SB_28101| Best HMM Match : DiS_P_DiS (HMM E-Value=6.6)
Length = 334
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/88 (30%), Positives = 38/88 (43%)
Frame = -3
Query: 385 RCCKENFSQCTSDSFSTSLRLPSLLFLVFHRFAIKDVYRTPGIFLEYTYKYAFRHDPA*E 206
RCC+ + C+ F T R + +++FA +D I E + + F +P
Sbjct: 128 RCCQRRITNCSRYGFHTFSRSQ----IQYYQFAERDCPEF-NINSELSSRLGFSGEPP-- 180
Query: 205 TQPPRPNGLPPSSKIGSYSAQWQRRVHR 122
PP P LPP SK S Q RR R
Sbjct: 181 --PPPP--LPPQSKSRSKRTQGGRRRRR 204
>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -1
Query: 648 LCSGGLVNLVLFNGXAS*SLQEVSSFTLLPRRRKVDDALKAKFPFLSGTVREYRANVLVC 469
+ GG+ ++ F +L + T P RR + A+ FLSGT+ + + + +
Sbjct: 144 IIGGGINGVMGFYPTMVLALLAYIADTTPPERRAIKLAVLEALAFLSGTLGHFSSGIYIH 203
Query: 468 NW---VSFIRILSLHPFSVVFL 412
+ +F ILSLH + ++L
Sbjct: 204 HLGYKATFWGILSLHLINFIYL 225
>SB_3931| Best HMM Match : GA (HMM E-Value=3.9)
Length = 288
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 380 ATGTSLVSRTPRNTTLNGCKLRILMKETQLQTSTLARYSRTVPERNGNLAFSASSTFLRR 559
A+ LVS+ ++T+ L++E T T A + V E+N + AS+ L R
Sbjct: 114 ASNNRLVSKGEEDSTVTKASHNSLVREKNNSTVTKAFNNHLVREKNNSTVTKASNNHLER 173
Query: 560 GSKVKELT 583
+ +T
Sbjct: 174 ENNNSTVT 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,158,195
Number of Sequences: 59808
Number of extensions: 551650
Number of successful extensions: 1346
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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