Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0552
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77669-5|CAK12563.1| 976|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z77669-4|CAB01242.1| 988|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical pr... 41 0.001
AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical... 41 0.001
Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical pr... 39 0.004
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ... 36 0.041
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr... 34 0.12
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ... 29 2.7
U80843-6|AAB37971.1| 345|Caenorhabditis elegans Skn-1 dependent... 28 8.1
>Z77669-5|CAK12563.1| 976|Caenorhabditis elegans Hypothetical
protein T07F10.1b protein.
Length = 976
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +1
Query: 22 WYLLSKFLQSEKRTQIPAITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVW 195
W +S+ L+ E Q TR +L+ D++ LA AG LS++ LN+ +LK E+++L W
Sbjct: 639 WKEISEMLK-ENHEQFSPQTRVRLIDDSFALARAGLLSYSIPLNLITYLKNEKEYLPW 695
>Z77669-4|CAB01242.1| 988|Caenorhabditis elegans Hypothetical
protein T07F10.1a protein.
Length = 988
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +1
Query: 22 WYLLSKFLQSEKRTQIPAITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVW 195
W +S+ L+ E Q TR +L+ D++ LA AG LS++ LN+ +LK E+++L W
Sbjct: 651 WKEISEMLK-ENHEQFSPQTRVRLIDDSFALARAGLLSYSIPLNLITYLKNEKEYLPW 707
>Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical protein
F49B2.6 protein.
Length = 1082
Score = 40.7 bits (91), Expect = 0.001
Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = +1
Query: 16 DTWYLLSKFLQSEKRTQIPAITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVW 195
+T+ L K LQ T I I R+ +L D+++L+ L+ + ++ +++ E D + W
Sbjct: 743 ETYRKLVKQLQ-RNHTTISPIDRSMILVDSFDLSKTSLLNISVYFDLLEYVEKETDKMTW 801
Query: 196 EAVFPMLDHVGRHICMC-IQGKFQAYGRHLLLQIYXXXXXXXXXXXXXXXTNLRCTVKSF 372
V L + I +Q + R L++++Y L+ + +
Sbjct: 802 SIVGKQLRTIEALIEESDYLDIYQDFQRSLIMRLYESLDWDEQGANPNQK-RLQVDIFAV 860
Query: 373 LCSNGYKPCVKDAQEHYAKWMQA--KNPD 453
C K C K A + Y +W+ + +NP+
Sbjct: 861 ACRLQIKDCTKQAYQRYLQWVSSGVRNPE 889
>AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical
protein F49B2.6 protein.
Length = 1082
Score = 40.7 bits (91), Expect = 0.001
Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = +1
Query: 16 DTWYLLSKFLQSEKRTQIPAITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVW 195
+T+ L K LQ T I I R+ +L D+++L+ L+ + ++ +++ E D + W
Sbjct: 743 ETYRKLVKQLQ-RNHTTISPIDRSMILVDSFDLSKTSLLNISVYFDLLEYVEKETDKMTW 801
Query: 196 EAVFPMLDHVGRHICMC-IQGKFQAYGRHLLLQIYXXXXXXXXXXXXXXXTNLRCTVKSF 372
V L + I +Q + R L++++Y L+ + +
Sbjct: 802 SIVGKQLRTIEALIEESDYLDIYQDFQRSLIMRLYESLDWDEQGANPNQK-RLQVDIFAV 860
Query: 373 LCSNGYKPCVKDAQEHYAKWMQA--KNPD 453
C K C K A + Y +W+ + +NP+
Sbjct: 861 ACRLQIKDCTKQAYQRYLQWVSSGVRNPE 889
>Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical
protein AC3.5 protein.
Length = 1090
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/58 (36%), Positives = 34/58 (58%)
Frame = +1
Query: 22 WYLLSKFLQSEKRTQIPAITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVW 195
W ++K L+ + ++ TRA+L+ D + LA +G L F TALN+T +L E + W
Sbjct: 747 WNDIAKQLE-KSHGKLSERTRARLISDVFALANSGALPFETALNVTSYLPMETATVPW 803
>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
protein Y42A5A.1 protein.
Length = 1045
Score = 35.5 bits (78), Expect = 0.041
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Frame = +1
Query: 61 TQIPAITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVWEAVFPMLDHVGRHIC 240
T IP +R++L+ D +A G+L++ N+T+++ E + ++ LD
Sbjct: 719 TMIPTNSRSRLIDDTLAMAENGQLTYKVPFNLTMYMSREIAYRPFQTFSAYLDFFLPR-- 776
Query: 241 MCIQGKFQAYGRHLLLQI---YXXXXXXXXXXXXXXXTNL---RCTVKSFLCSNGYKPCV 402
M I + Y ++L L + + T+L R V C Y+PCV
Sbjct: 777 MYIHEGWSIYKKYLELVVGIPFDKFNAEGLDVSFDHNTDLFHTRQIVVFRACGIEYEPCV 836
Query: 403 KDAQEHYAK 429
+ A++ +A+
Sbjct: 837 RMAKQRFAE 845
>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical protein
T16G12.1 protein.
Length = 1890
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 19 TWYLLSKFLQSEKRTQIPAITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVWE 198
+WY + L S T + + TRA LL DA +G L++TL+L E+ WE
Sbjct: 1557 SWYSIQAQLLSNMNT-MSSTTRAMLLDDANFFYQSGRWEMTKFLDLTLYLVNEDSLAPWE 1615
>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
protein Y37B11A.2 protein.
Length = 1133
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 388 YKPCVKDAQEHYAKWMQAKNPDEGN 462
YK CV + ++ YA WM DEG+
Sbjct: 856 YKGCVLETKKRYAGWMYEHENDEGS 880
>U80843-6|AAB37971.1| 345|Caenorhabditis elegans Skn-1 dependent
zygotic transcriptprotein 4 protein.
Length = 345
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -1
Query: 573 FTLLPRRRKVDDALKAKFPFLSGTVRE---YRANVLVCNWVSFIRILSLHPFSVVFLGVL 403
F +L RRK+ +ALK +L G + E + N L + IRILS F V L VL
Sbjct: 126 FEILRYRRKMHEALK----YLLGKLFEGKTVKVNHLTIKCGNVIRILSTVKFRVKILEVL 181
Query: 402 D 400
D
Sbjct: 182 D 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,382,271
Number of Sequences: 27780
Number of extensions: 409876
Number of successful extensions: 1040
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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