Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0552
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48000.1 68415.m06008 pentatricopeptide (PPR) repeat-containi...    31   0.62 
At1g68310.1 68414.m07803 expressed protein contains Pfam profile...    29   3.3  
At4g15215.1 68417.m02332 ABC transporter family protein similar ...    29   4.4  
At2g33190.1 68415.m04066 F-box family protein contains F-box dom...    29   4.4  

>At2g48000.1 68415.m06008 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 367

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +1

Query: 406 DAQEHYAKWMQAKNPDEGNPIANQYIGPVFTYGTRK---EWEFGLQRVINFPPSRKQSER 576
           +A +  AK++Q  N        + + G +  YG++K   E E  L  + +F  SR +   
Sbjct: 265 NAVDKLAKFVQRANSAGWKMSRSMFHGLMIMYGSQKRFKEMENVLSEMESFKISRSKKTL 324

Query: 577 TYLLKTLAGXPIEEYKINQAS 639
             LL+  A    +E+K+NQ +
Sbjct: 325 CILLRVYAATHGQEHKVNQVA 345


>At1g68310.1 68414.m07803 expressed protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 159

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 92  SLARVIAGICVRFSLCRNLDKRYQVSLVV 6
           S+A VI G+CVR  L R+L  RY++ + V
Sbjct: 90  SMATVI-GLCVRVKLLRSLPSRYKIDIRV 117


>At4g15215.1 68417.m02332 ABC transporter family protein similar to
           PDR5-like ABC transporter [Spirodela polyrhiza]
           GI:1514643; contains Pfam profile PF00005: ABC
           transporter
          Length = 1390

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 110 FHASCKSLARVIAGICVRFSLC 45
           FH SC S+ R IA IC  F  C
Sbjct: 624 FHLSCISMFRAIASICRTFVAC 645


>At2g33190.1 68415.m04066 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 379

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -1

Query: 540 DALKAKFPFLSGTVREYRANVLVCNWVSFIRILSLHPFSVVFLGVLDTRLVPVAAK 373
           D L++ F  LS  +  +RA  +  NW +  R   L+P+ +VF G       P+  K
Sbjct: 14  DLLRSIFESLS-CLDFHRAGTVCSNWYAVSRSCPLYPWRIVFRGKNSVLFDPIQDK 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,613,945
Number of Sequences: 28952
Number of extensions: 391308
Number of successful extensions: 1096
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)