Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0550
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           87   2e-17
01_06_0783 + 31975261-31975398,31975583-31975726                       85   5e-17
01_05_0324 - 20946774-20946935,20947301-20947780                       83   2e-16
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     78   7e-15
02_04_0361 - 22359278-22359439,22362291-22362728                       77   2e-14
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504...    29   4.3  
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989     29   5.7  

>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 38/58 (65%), Positives = 45/58 (77%)
 Frame = +2

Query: 47  KAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNF 220
           K  +K+ADM EEM+Q+A D A  A EK  +EKDIA +IKKEFDK + PTWHCIVGRNF
Sbjct: 46  KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103


>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
 Frame = +2

Query: 35  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKYNPTWHCIV 208
           M + KA++++ DM  +MQ  A+  A +AL++F++   + IAA IKKEFD  + P W C+V
Sbjct: 1   MLEGKAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVV 60

Query: 209 GRNFGSYVTHETRHFIYFYLGQVAILLFK 295
           G +FG Y TH    FIYF LG +  L+FK
Sbjct: 61  GASFGCYFTHSKGSFIYFKLGALRFLVFK 89


>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
 Frame = +2

Query: 65  ADMSEEMQQDAVDCATQA---LEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVT 235
           ADMS  MQ  A  CA ++   L+KF+  + +A  +KKEFDK Y PTWHCIVG ++GS+VT
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVGTSYGSFVT 183

Query: 236 HETRHFIYFYLGQVAILLFKS 298
           H    F+YF + ++ ++LFK+
Sbjct: 184 HARGCFLYFSMDKIIVMLFKT 204


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 36/68 (52%), Positives = 45/68 (66%)
 Frame = +2

Query: 23  PKXKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHC 202
           P   +   K  IK+A+M EEM+Q+A D    A EK  +EKDI  +IK EFDK + PTWHC
Sbjct: 50  PPPPLAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYIK-EFDKNHGPTWHC 108

Query: 203 IVGRNFGS 226
           IVG NFG+
Sbjct: 109 IVGHNFGT 116


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
 Frame = +2

Query: 14  KNKPKXKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDKKYN 187
           K K + K+  R   ++ ADM   MQ+ AV  A  A+        K +A  +KKEFD  Y 
Sbjct: 97  KGKEERKVSVR---VRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDATYG 153

Query: 188 PTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 298
           P WHCIVG  FGSYVTH    F+YF + +V +LLF++
Sbjct: 154 PAWHCIVGTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190


>12_01_0612 -
           5044639-5044858,5045010-5045167,5045440-5045684,
           5046006-5046294,5047540-5048561,5049320-5049389
          Length = 667

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 59  KNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYN 187
           +N  + EE  Q  +DC  +  E+F+ E+D    IK   +KK N
Sbjct: 590 ENCKLREEQIQRIIDCQVKDAEEFDAEQD--ELIKTHEEKKAN 630


>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
          Length = 476

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 249 WRVSCVTYEPKLRPTMQCQVGLYFLSNSFLMNAAMSFSMLNFSSA*VAQSTA 94
           WR   +     +R  + C VGL+F   +  ++A + +S L F  A +A +T+
Sbjct: 260 WRELLLRPSAMVRRIVTCVVGLHFFQQASGIDAIVLYSPLVFKKAGMASNTS 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,096,919
Number of Sequences: 37544
Number of extensions: 298405
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)