Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0550
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light ch...   185   4e-47
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    87   1e-17
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    83   3e-16
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    68   7e-12
AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical ...    68   7e-12
AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical ...    31   0.73 
AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D prot...    29   5.1  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    28   8.9  

>U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light chain
           protein 1 protein.
          Length = 89

 Score =  185 bits (450), Expect = 4e-47
 Identities = 82/89 (92%), Positives = 88/89 (98%)
 Frame = +2

Query: 35  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 214
           M DRKAVIKNADMS++MQQDA+DCATQALEK+NIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1   MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 215 NFGSYVTHETRHFIYFYLGQVAILLFKSG 301
           NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 35/83 (42%), Positives = 57/83 (68%)
 Frame = +2

Query: 50  AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 229
           A ++++ M   M+Q+A   A +++  +++E DIA  +K  FD++Y P WHCI G++FGS+
Sbjct: 58  ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSF 117

Query: 230 VTHETRHFIYFYLGQVAILLFKS 298
           VT E   FIYF +G +A +LFK+
Sbjct: 118 VTFEPDSFIYFRIGTIAFMLFKT 140


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 34/89 (38%), Positives = 54/89 (60%)
 Frame = +2

Query: 35  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 214
           M + K  +K  DM +  +   +    +A   +NI+KD+AAF+K+E DKK+  TWH I G+
Sbjct: 1   MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGK 60

Query: 215 NFGSYVTHETRHFIYFYLGQVAILLFKSG 301
            FGS V++E  HFI     +V ++++K G
Sbjct: 61  CFGSRVSYEMGHFILLKCNKVNVMIYKCG 89


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 29/94 (30%), Positives = 58/94 (61%)
 Frame = +2

Query: 14  KNKPKXKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 193
           +  P+  +     +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY   
Sbjct: 38  REPPEKALRFENVIIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGH 97

Query: 194 WHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 295
           W C+VGRNFGS++  +   FI+F + +++++LF+
Sbjct: 98  WQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 129


>AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2a protein.
          Length = 111

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 29/94 (30%), Positives = 58/94 (61%)
 Frame = +2

Query: 14  KNKPKXKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 193
           +  P+  +     +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY   
Sbjct: 20  REPPEKALRFENVIIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGH 79

Query: 194 WHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 295
           W C+VGRNFGS++  +   FI+F + +++++LF+
Sbjct: 80  WQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 111


>AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical
           protein Y10G11A.3 protein.
          Length = 134

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +2

Query: 14  KNKPKXKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKK 181
           +  P+  +     +I+  ++  E  +++      AL+   IE +IA+F+K++FD K
Sbjct: 37  REPPEKALRFENVIIQETNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAK 92


>AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical
           protein Y38F1A.5 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 216 LRPTMQCQVGLYFLSN 169
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D
           protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 216 LRPTMQCQVGLYFLSN 169
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -2

Query: 364 YPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKI 215
           Y  D    + + KI  +L  LTA K  +   S V+V EV     HI+  I
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPI 691


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,179,481
Number of Sequences: 27780
Number of extensions: 280245
Number of successful extensions: 703
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)