Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0547
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    28   1.2  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    28   1.6  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    26   5.0  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    25   8.7  

>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 249 VPGARRATELAIPHAPDCLRDWTEKYGV 332
           +PG    T    PH  DCLR W  +Y +
Sbjct: 83  LPGVDGETGKVNPHKIDCLRHWKREYSM 110


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 327 GVISMHIYYTNKPWEIRCKSGDSIKPGPP 413
           G++ + I Y N   ++ CKSG S+K G P
Sbjct: 10  GLVGLLILYKNV-CQVLCKSGSSVKSGSP 37


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = -2

Query: 548 HFTEWPQIPRSQLKCCSLGLTAE*FLNFIGNLVGVSQAVEYQSVQGWTWLYGITGLAT 375
           H+T   Q  R      S GL       F G      + V   + +GW W+Y + GL +
Sbjct: 177 HYTRKEQCQRLSYLFASAGLAGA----FGGLFAYALEQVHAGNKEGWQWIYIVEGLVS 230


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 366 KVYSCSRCALI*RRTSPSNLVGSQG 292
           ++ +C  CAL+ +   PS +VG+ G
Sbjct: 394 RLSACGVCALVRKMNKPSMIVGTDG 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,930
Number of Sequences: 5004
Number of extensions: 63595
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)