Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0547
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18192| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_7350| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24) 32 0.43
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 32 0.43
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_9893| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_58416| Best HMM Match : MrpF_PhaF (HMM E-Value=0.24) 28 9.3
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 9.3
>SB_18192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 52.8 bits (121), Expect = 3e-07
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Frame = +3
Query: 18 LRIPTTEAELNSTFFKKQNCIPNMGTHYYYNMTRKMDCEEMLLWFALI--TDSELVGTGF 191
+ IP E +T + + C+ MG HY+YN+++ DC+ L F L+ T ++ G G+
Sbjct: 166 MEIPLNVDEFRNTPWVEGECVRAMGVHYHYNISKTFDCDYALPVFLLVDKTSHKVHGFGW 225
Query: 192 QTIGKLNKKNLKDRNWFETVPGARRATELAIPHAPDCLRDWTEKYGVISM-HIYYTNKPW 368
K+ K N W E P A + P+C+ D Y V+S+ HIY+ N P
Sbjct: 226 AVPLKVEKTN----RW-EHPPPAIFGRSIKEKDMPNCIVD----YPVVSVQHIYFKN-PL 275
Query: 369 EIRC 380
I C
Sbjct: 276 AIGC 279
>SB_7350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 50.8 bits (116), Expect = 1e-06
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Frame = +3
Query: 18 LRIPTTEAELNSTFFKKQNCIPNMGTHYYYNMTRKMDCEEMLLWFALI--TDSELVGTGF 191
+ IP E +T + + C+ MG HY+YN+++ DC+ L F L+ T ++ G G+
Sbjct: 49 MEIPLNVDEFRNTPWVEGECVRAMGVHYHYNISKTFDCDYALPVFLLVDKTSHKVHGFGW 108
Query: 192 QTIGKLNKKNLKDRNWFETVPGARRATELAIPHAPDCLRDWTEKYGVISM-HIYYTNKPW 368
K+ K N W E P A + P+C+ Y V+S+ HIY+ N P
Sbjct: 109 AVPLKVEKTN----RW-EHPPPAIFGRSIKEKDMPNCI----VNYPVVSVQHIYFKN-PL 158
Query: 369 EIRC 380
I C
Sbjct: 159 AIGC 162
>SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24)
Length = 440
Score = 32.3 bits (70), Expect = 0.43
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
Frame = +3
Query: 60 FKKQNCIPNMGTHYYYNMTRKMDCEEMLLWFALITDSEL---VGTGFQTIGKLNKKNLKD 230
F + N +P G Y N KMD L+ AL+ D +L V T+G +
Sbjct: 168 FGRSNGVPISGYKVYVNGEYKMDVRSQLMAKALVDDLDLRYPVQLSIMTVGADGSCSSDV 227
Query: 231 RNWF-ETVPGARRATELAIPHAPDC--LRDWTEKYGVISMHIY-YTNKPWEIRCKSGDSI 398
F T+ G+R + AI A D R + Y M TN +E+ + GD +
Sbjct: 228 STTFTNTITGSRMSIPQAIQGADDTSKWRTFVALYDYDPMKSSPNTNPEFELAFREGDIL 287
Query: 399 K 401
+
Sbjct: 288 R 288
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 32.3 bits (70), Expect = 0.43
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
Frame = +3
Query: 60 FKKQNCIPNMGTHYYYNMTRKMDCEEMLLWFALITDSEL---VGTGFQTIGKLNKKNLKD 230
F + N +P G Y N KMD L+ AL+ D +L V T+G +
Sbjct: 1716 FGRSNGVPISGYKVYVNGEYKMDVRSQLMAKALVDDLDLRYPVQLSIMTVGADGSCSSDV 1775
Query: 231 RNWF-ETVPGARRATELAIPHAPDC--LRDWTEKYGVISMHIY-YTNKPWEIRCKSGDSI 398
F T+ G+R + AI A D R + Y M TN +E+ + GD +
Sbjct: 1776 STTFTNTITGSRMSIPQAIQGADDTSKWRTFVALYDYDPMKSSPNTNPEFELAFREGDIL 1835
Query: 399 K 401
+
Sbjct: 1836 R 1836
>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2631
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 54 TFFKKQNCIPNMGTHYYYNMTRKMDCEEMLLWFALITDSELVGTGFQTIGKL 209
TFF+K + +PN+ + ++NM K D + + LI +L +G IG L
Sbjct: 1164 TFFQKSH-LPNINSSTFFNMETKEDKSIVSDYQVLIEQKKLNFSGVYNIGLL 1214
>SB_9893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 387 RTCNEFPKVYSCSRCALI*RRTSPSNLVGSQGR 289
+ +E P VYS +LI + SPS+L G GR
Sbjct: 23 KVLDEDPSVYSSRSISLILSKNSPSSLEGMSGR 55
>SB_58416| Best HMM Match : MrpF_PhaF (HMM E-Value=0.24)
Length = 421
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/63 (22%), Positives = 33/63 (52%)
Frame = -2
Query: 746 IVGXLKXLAVPIXKIYVSQRDICSIGVARISRLLIECITIFL*NNYF*T*FSSVVVLNMA 567
++G L + + I ++ + I +A I+ + I C ++ ++ F+S++V+ +A
Sbjct: 167 VIGIASLLLLLLPLIVIAIASMIVIAIASINVIAIACFSVIATASFIVIAFASIIVIAIA 226
Query: 566 SSI 558
S I
Sbjct: 227 SFI 229
>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 1127
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 444 IASR*VSVCPGVDLALWNHRTCNEFPKVYSCSRC 343
I++ V VCP +D + + R N+ + CSRC
Sbjct: 582 ISTNFVCVCPLIDAQMTSRRFLNKKTCCWQCSRC 615
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,889,218
Number of Sequences: 59808
Number of extensions: 480681
Number of successful extensions: 977
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -